Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1873 398 2e-108 seq533 315 2e-83 seq1688 262 1e-67 seq299 232 2e-58 >seq1873 Length=17552 Score = 398 bits (440), Expect = 2e-108 Identities = 404/512 (79%), Gaps = 17/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| ||| | || | ||| || | || ||||| ||||||||||| Sbjct 9886 GTACTCATTCCAATTACGAAGCCTCATATGAGTCCCGCATTGTTATTTTTTGTCACTACC 9827 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 9826 TCCCCGAGCCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 9767 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 9766 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 9707 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | | || ||||||||| ||||||||| ||||| | |||||| ||| | | || | Sbjct 9706 AAACATATAATATACCATCGACAGTTGATAGAGCAGATACTTTGAAGGAA-TAGCACCAG 9648 Query 239 CTCAAGGC---CATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGC 294 |||||||| |||| | | |||||||| || |||||| | | ||||| | | Sbjct 9647 CTCAAGGCTGAAATGC--TCGGCAAAGTTATTCAGAGTCACCACCGAAAGTCCGAA-GAC 9591 Query 295 GTTGGTTTTTTATCTAATAAATACAC-CCCTTCCGAAGTCGGGGTTTTTAGCATGTATTA 353 | | ||| |||||||| ||| || ||||| | | | ||||||||||| Sbjct 9590 ATGG---TTTGCACTAATAAAAGCACATCCAGCCGAAACTGAACGTATAAGCATGTATTA 9534 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT-AAACGATAACTGA 412 |||||||||||||||| |||||||| || || || ||| || ||| |||||||| Sbjct 9533 GCTCTAGAATTACCACAGTTATCCAATTAACAAAACAC-ATCCCATGAAATTATAACTGA 9475 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||| ||||||| | | | | | ||||| ||||||||||||| Sbjct 9474 TTTAATGAGCCATTCGCGGTTTCACCAT-TCAAAGGTATGAACTTAAACATGCATGGCTT 9416 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||||||||||||||||||||||| Sbjct 9415 AATCTTTAAGACAAGCATATGACTACTGGCAG 9384 >seq533 Length=64277 Score = 315 bits (348), Expect = 2e-83 Identities = 380/506 (75%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 ||||||||| | |||| |||| ||| | | || |||| || |||||||||||| || Sbjct 44413 CATTCCAATAGCGAGACTCAAA-GAGTCTCGCCTCGTTATTGATAGTCACTACCTCCTCG 44471 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 | || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 44472 CATTAAGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 44531 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 ||||||||||||||| ||||||||| |||| |||||||||||| ||||||| || | Sbjct 44532 GGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGAAGTCAC 44591 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 | ||||||||||||||||||| |||||| | | ||| || | ||||||| |||| Sbjct 44592 ATGGACTACCATCGAAAGTTGATAAGGCAGACACTCGAACGATACGTCGCCGGTGCAAGA 44651 Query 246 CCATGCGATTCGTTAAGTTATTATGA-ATCACC--AAGGAGCCCCGAAGGGCG-TTGGTT 301 || |||||| | || ||||| || ||||| || | || ||| || ||||| Sbjct 44652 CCGTGCGATCAGCGAAATTATTCAGAGTTCACCGTAACGGGC----AAGCCCGATTGGTC 44707 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGT-CGGGGTTTTTAGCATGTATTAGCTCTAG 360 || | |||||||| | | ||| | | ||| |||| ||| ||| |||||||||| | Sbjct 44708 TTAT-TCTAATAAGTGCGCCCGTACGTTAGTCCGGGCTTTGGTGCACGTATTAGCTCCAA 44766 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||||| | | ||||||| | | | || | ||| | || | ||| ||| |||||||| Sbjct 44767 AATTATCGCAGTTATCCGTTTGGATAGTCAAGATCGAGTAGATTATAGCTGTTTTAATGA 44826 Query 421 GCCATTCGCAGTTTCAC--TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||| ||||||| ||||| | | ||| | || |||||||||||||||||||||||| Sbjct 44827 GCCGTTCGCAGATTCACCATTAACCGAT--GTGAT-CTTAGACATGCATGGCTTAATCTT 44883 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 | | |||||||| || ||||||| Sbjct 44884 TTATCGAAGCATATCACCGCTGGCAG 44909 >seq1688 Length=11477 Score = 262 bits (290), Expect = 1e-67 Identities = 309/407 (76%), Gaps = 21/407 (5%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3598 TGGATAAGTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTC 3539 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATCCTA 193 |||||| ||||||||| |||| |||||||||| |||| |||||||||| | | || ||| Sbjct 3538 TCCGGAGTCGAACCCTTATTCTCCGTTACCCG-TGATAACCATGGTAGACTAATAGACTA 3480 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 ||||| |||||||||||||| | || | | ||||| ||| | || || | ||| Sbjct 3479 CCATC--TGGTTGATAGGGCAGACACTTTTTTCGATCATCGACGGAT--AGACCGT-CGA 3425 Query 254 TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATA 313 || | || | |||| || ||| ||| | | | ||| ||||||| | |||||| Sbjct 3424 TTGGCTACGATATTCAGAGTCAACAAACAACGTCAAAGACGATTGGTTTGT--ACTAATA 3367 Query 314 AATACACCCCTTCCGAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGT 372 | || |||||||||||||||| |||| | |||||||||||||| ||||||||| | || Sbjct 3366 TCTGCATCCCTTCCGAAGTCGGGATTTTGTCGCATGTATTAGCTCCAGAATTACCGCAGT 3307 Query 373 TATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432 ||||| || | | | || ||| ||| ||| | ||||||||| | |||||| Sbjct 3306 TATCC------TATCGAATTTCGAAGAAAATAATATCTGCTCTAATGAGCCGTACGCAGT 3253 Query 433 TTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||| | || ||| | ||| |||||||||||||||||||| Sbjct 3252 TTCACT-TGAAG-TTG---AACTTTATACATGCATGGCTTAATCTTT 3211 >seq299 Length=251443 Score = 232 bits (256), Expect = 2e-58 Identities = 202/250 (81%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 || |||| ||||| | |||| || || ||| ||| | ||||||||| ||||||| Sbjct 72145 CTATATCGTTATTTTTCGTCATAACTACCTTGTGCCGGAAGCAGGTAATTTGAGCGCCTG 72086 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 72085 CTGCTTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGAT 72026 Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 ||||||||||||||| |||||||||||| | ||||||||||| |||||||| ||| Sbjct 72025 TCCCCGTTACCCGTTACAACCATGGTAGGCGCAGAACCTACCATCGACAGTTGATAAGGC 71966 Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGA 271 ||| ||||||| || | ||||||| | || || |||||| | |||||||| | Sbjct 71965 AGACATTTGAAAGATGCGTCGCCGGTGCGAGACCGTGCGATCAGCAAAAAGTTATTCAAA 71906 Query 272 ATCACCAAGG 281 |||||||||| Sbjct 71905 ATCACCAAGG 71896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510293108992