Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1238 140 1e-30 seq669 136 2e-29 seq214 120 1e-24 seq3069 87.8 7e-15 >seq1238 Length=96074 Score = 140 bits (154), Expect = 1e-30 Identities = 119/144 (83%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 29805 GAGTCGGGTTGCTTGAGAATGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 29864 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 29865 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 29923 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 29924 GAGAGAGTTCAATAGTACGTGAAA 29947 Score = 132 bits (146), Expect = 2e-28 Identities = 108/130 (83%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA-GA 613 ||||| | ||| |||||||||||||||||||||||||||||| ||| ||||| || | Sbjct 30561 GAGCACAACTGCTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGTTGAAGTCAAGG 30620 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| || |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 30621 GGAAACCTTGATGGAGGACCGAAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 30680 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 30681 ATAGGGGCGA 30690 >seq669 Length=137184 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 98634 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 98693 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 98694 ATTACCGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 98753 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 98754 AGAGAGTTCAACAGTACGTGAAA 98776 >seq214 Length=177928 Score = 120 bits (132), Expect = 1e-24 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||| ||| || |||||| |||| |||| |||||| | | ||||| ||| |||||| | Sbjct 108403 GTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTTAATATTACCG 108462 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||||| ||||||| |||| ||||| ||| ||| |||||| | ||||||| Sbjct 108463 CGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGATAAGAACTTTGAAGAGAGAGT 108522 Query 167 TAAAAAGCACGTGAAA 182 | || || |||||||| Sbjct 108523 TCAACAGTACGTGAAA 108538 >seq3069 Length=55739 Score = 87.8 bits (96), Expect = 7e-15 Identities = 103/143 (72%), Gaps = 15/143 (10%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| || | |||||| | | ||||| ||| ||| Sbjct 46776 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGCGTGGTAAACTCCATCTAAGGCTTAAT 46717 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| | ||||||||||| | |||||| ||||||| |||||| | Sbjct 46716 ATTACCGCGAGACCGATAGAGAACAAGT---------------TGAAAAGAACTTTGAAG 46672 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 46671 AGAGAGTTCAACAGTACGTGAAA 46649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079446568550