Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4285 197 3e-48 seq1470 197 3e-48 seq4448 194 3e-47 >seq4285 Length=15357 Score = 197 bits (218), Expect = 3e-48 Identities = 204/259 (79%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATAC 122 || || || ||||||||||||||||| ||||| ||||||||||| | || ||| | Sbjct 5085 GCTAGCACGTTTACTTTGAAAAAATTGGAGTGCTCAAAGCAGGCGCTACAGCCTGAA--C 5142 Query 123 ATTAG--CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CC 179 ||| | ||||||||||| ||||||||| | ||||||||||| ||||| || | ||| | Sbjct 5143 ATTCGTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGCTT-TCGGAGTC 5200 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | ||||||||||||||||| || |||||| | ||| | || |||||||||||| Sbjct 5201 GAGGTAATGATTAATAGGGACAGACGGGGGCATTCGTACTGCGACGTTAGAGGTGAAATT 5260 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| ||||||||||||||| || ||||| ||||||||||||||| Sbjct 5261 CTTGGATCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 5320 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 5321 A-AGAACGAAAGTTAGAGG 5338 >seq1470 Length=43379 Score = 197 bits (218), Expect = 3e-48 Identities = 204/259 (79%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATAC 122 || || || ||||||||||||||||| ||||| ||||||||||| | || ||| | Sbjct 42814 GCTAGCACGTTTACTTTGAAAAAATTGGAGTGCTCAAAGCAGGCGCTACAGCCTGAA--C 42757 Query 123 ATTAG--CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 ||| | ||||||||||| ||||||||| | ||||||||||| ||||| || | ||| | Sbjct 42756 ATTCGTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGCTT-TCGGAGTC 42699 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | ||||||||||||||||| || |||||| | ||| | || |||||||||||| Sbjct 42698 GAGGTAATGATTAATAGGGACAGACGGGGGCATTCGTACTGCGACGTTAGAGGTGAAATT 42639 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| ||||||||||||||| || ||||| ||||||||||||||| Sbjct 42638 CTTGGATCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 42579 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 42578 A-AGAACGAAAGTTAGAGG 42561 >seq4448 Length=14809 Score = 194 bits (214), Expect = 3e-47 Identities = 204/259 (79%), Gaps = 11/259 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT--GCTCGAATAC 122 || || || ||||||||||||||||| ||||| ||||||||||| | || ||| | Sbjct 2674 GCTAGCACGTTTACTTTGAAAAAATTGGAGTGCTCAAAGCAGGCGCTACAGCCTGAA--C 2731 Query 123 ATTAG--CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 ||| | ||||||||||| ||||||||| | ||||||||||| ||||| || | ||| | Sbjct 2732 ATTCGTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTCGTTGGCTT-TCGGAGTC 2789 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | ||||||||||||||||| || ||||| || ||| | || |||||||||||| Sbjct 2790 GAGGTAATGATTAATAGGGACAGACGGGGCATTC-GTACTGCGACGTTAGAGGTGAAATT 2848 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| ||||||||||||||| || ||||| ||||||||||||||| Sbjct 2849 CTTGGATCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 2908 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 2909 A-AGAACGAAAGTTAGAGG 2926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915113952896