Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1326 98.7 8e-16 seq1672 89.7 4e-13 >seq1326 Length=48828 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||||| | ||||| || ||||| || || | | ||||||||| ||||| Sbjct 33642 GCAATAGATGCCAAATTGCACACGGCTATTTCATCCTTTGAAGAATACTCGACTATTTCA 33583 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||||| ||| || ||||| || | |||||| ||||| || ||||| || Sbjct 33582 GTGCACAAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACAC 33523 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 ||||||||||||| || ||| || || || || || | |||||| ||||| ||| || | Sbjct 33522 GCATCCTTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAATGTGGTAC 33463 Query 66188 CA 66189 || Sbjct 33462 CA 33461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||||| |||||| | | | ||| | | | ||||||||||| |||| ||||| Sbjct 33300 TTCACCCCAGACTTCGAATAAATCAGGAGATTCTTTAGGACACATCAGACACCAGTCACC 33241 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | ||| || | ||| |||| ||| || ||||| | ||| | || | ||| | Sbjct 33240 GTTGCTTTCGACTCTCTTCATGAATAAATCGGGAATCCACATGGCAAAAAACAAATCCCT 33181 Query 66382 TGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 ||| || | ||| || | || ||| ||||| |||||| | || ||||||| || | Sbjct 33180 TGCACGATTCTCTTCTTTCCCAGTG-TTTTTCTTCAAGTCCAAAAATTCAAAGACATCTG 33122 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 ||||||| ||||||| || || ||||||| ||| Sbjct 33121 CATGCCACGGTTCCAAATACATAGCGAACGCGCC 33088 >seq1672 Length=38749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 61475 CTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGAT 61534 |||| |||| |||| | || | || ||||| | || || || |||||||| |||| Sbjct 32453 CTACTTTTGCTGAAAGGGTGATTGCTTTTGCAGCAGTTGAAGGGATATTTTTCTCTGGAA 32512 Query 61535 CGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCA 61594 ||||| | ||||| ||| | ||||| |||||||||||||| || |||||||| || | Sbjct 32513 GCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGACTTATGCCAGGCCTGACCTTTAGTA 32572 Query 61595 ATGAGTTGATATCACGCGACGAGG 61618 | ||| | || || || || |||| Sbjct 32573 ACGAGCTTATCTCTCGTGATGAGG 32596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397522443925280