Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq139 140 5e-31 seq177 136 6e-30 >seq139 Length=139565 Score = 140 bits (154), Expect = 5e-31 Identities = 143/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 ||||||| |||||| ||||||| | | || |||||||| | ||||| | ||||| Sbjct 83448 GCTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAA 83390 Query 105 GAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCA 163 | | |||| | |||||||| | | ||||||| || |||| || ||| | | ||| Sbjct 83389 GGAGGTTCAGCGGGTTACCCGGGCTTTTCGGCCAGGGA---AGACACGCTGATTCCTTCA 83333 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 83332 GTGTAGCGCGCGTGCGGCTCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAAT 83274 Query 224 CT 225 || Sbjct 83273 CT 83272 >seq177 Length=65808 Score = 136 bits (150), Expect = 6e-30 Identities = 142/182 (78%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 ||||||| |||||| ||||||| | | || |||||||| | ||||| | ||||| Sbjct 16122 GCTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAA 16064 Query 105 GAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCA 163 | | |||| | |||||||| ||| ||||||| || |||| | ||| | | | | Sbjct 16063 GGAGGTTCAGCGGGTTACCCGGGCCTTTCGGCCAGGGA---AGACACACTGATTCCTTAA 16007 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 16006 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCAAT 15948 Query 224 CT 225 || Sbjct 15947 CT 15946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993181240