Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq177 181 2e-43 seq139 176 8e-42 >seq177 Length=65808 Score = 181 bits (200), Expect = 2e-43 Identities = 218/288 (76%), Gaps = 14/288 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| ||||| || ||| ||| || ||| | || ||| ||||||| ||||||||||| Sbjct 15195 TGCTCTTCATTGAGTG--CCGAGGTAGGCCGGTACGTTTGCTTTGAACAAATTAGAGTGC 15252 Query 98 TCAAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCG 153 | |||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 15253 TTAAAGCAGGTTGTCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 15311 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| Sbjct 15312 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGC 15370 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 15371 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 15430 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| |||||||||||||||| ||||||||||||| || Sbjct 15431 AGCATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 15477 >seq139 Length=139565 Score = 176 bits (194), Expect = 8e-42 Identities = 217/288 (75%), Gaps = 14/288 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 ||| |||||||| ||| ||| || ||| | || ||| ||||||| ||||||||||| Sbjct 82524 TGCTCTTCACTGAGTG--CCGAGGTAGGCCGGTACGTTTGCTTTGAATAAATTAGAGTGC 82581 Query 98 TCAAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCG 153 | ||||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 82582 TTAAAGCAGGCTGTCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 82640 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| | ||| |||||||||||| ||| || || || Sbjct 82641 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATACGGACAGATGGAGGC 82699 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 82700 ATTTGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 82759 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| | |||| |||||||||||||||| ||||||||||||| || Sbjct 82760 AGCATATGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 82806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191433728