Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq139 188 1e-45 seq177 185 1e-44 >seq139 Length=139565 Score = 188 bits (208), Expect = 1e-45 Identities = 218/293 (74%), Gaps = 48/293 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 83339 TCCTTCAGTGTAGCGCGCGTGCGGCTCAGAACATCTAAGGGCATCACAGACCTGTTATTG 83280 Query 72 CCTCAAACT--TCCATT--------GGCTGGAAG-CCAATA----------GTCCCTC-- 108 | |||| || | || | ||| || |||| | || | || Sbjct 83279 C-TCAATCTCGTGCAGATAGAAGCCGCCTGTCAGTCCAAGAAGATTTGTTTGTACGTCGG 83221 Query 109 ---TAAGAA--GCCAGCCACCAA--------CCATAGTCGATGG----------GGCTAT 145 |||||| ||| | || | || ||| ||| | | |||| Sbjct 83220 TAGTAAGAACCGCCCGACAGAACTACGGGGGCCTTAGA-GATAGCATAAGTTACGCCTAT 83162 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 83161 TTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA 83102 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 83101 AGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 83049 Score = 140 bits (154), Expect = 5e-31 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || || ||||||||||||||||||||||||||||||| |||||||| Sbjct 134833 CTATTTAGCAGGCTAGAGTTTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 134774 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||| ||||| Sbjct 134773 ACTAAGAACGGCCATGCACCACCACCCACCGAATC 134739 >seq177 Length=65808 Score = 185 bits (204), Expect = 1e-44 Identities = 214/293 (73%), Gaps = 48/293 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16013 TCCTTAAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTA 15954 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC----------CAGCC 121 | |||| || | |||| |||||| ||| ||||||||| || | Sbjct 15953 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCAGTCTAAGAAGATTTGTTTGTACATCG 15896 Query 122 ---------ACCAACC-ATAGT-CGATGGGG-------------------------CTAT 145 ||| || | || | | |||| |||| Sbjct 15895 GTAGTAAGAACCGCCCGACAGAACTACGGGGGTCTTAGAGATACCATAAGTTACGCCTAT 15836 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 15835 TTAGCAGGCTAGAGTTTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA 15776 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 15775 AGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 15723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796792775016