Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq41 320 3e-85 seq139 313 4e-83 seq129 300 3e-79 seq76 289 5e-76 >seq41 Length=512037 Score = 320 bits (354), Expect = 3e-85 Identities = 244/284 (86%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 404768 TACTGAGCAGGATTACTATCGCAACGACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 404827 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 404828 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGGCGGGTGAACAATCCGACGCTTGGCG 404887 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 404888 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTCGCTA 404947 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||| | | Sbjct 404948 TGACCGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACGCCTCTTG-C 405006 Query 240 TCAAA---TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| ||| | | | |||||||||||||||| ||||| Sbjct 405007 TGAAAGCTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 405048 >seq139 Length=139565 Score = 313 bits (346), Expect = 4e-83 Identities = 242/283 (86%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | | |||| |||||||||||||||||||||||||||||| Sbjct 117952 TACTGAGCAGGATTACTACCGCAACGACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 117893 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||| |||||||||||| | | || | ||||||||||||| |||||| || Sbjct 117892 ACGACGGTCTAAATCCAGCTCACGTTTCTTGTTGGCGGGTGAACAATCCGACGCTTGGCG 117833 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 117832 AATTCTGCTTCGCAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCGACGTCGCTA 117773 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 117772 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 117713 Query 240 TCA-AAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| ||| | | | |||||||||||||||| ||||| Sbjct 117712 GAATAATCTTCAA--GCCAAAAGGATCGATAGGCCTTGCTTTC 117672 >seq129 Length=157023 Score = 300 bits (332), Expect = 3e-79 Identities = 213/242 (88%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 76760 ATCAGTAGGGTAAAACTAACCTGTTTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 76819 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| Sbjct 76820 GGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACA 76879 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||| |||||| || |||||||||||||||||| |||||||||||||||| ||| Sbjct 76880 TCGAAGGATCGAAAAGCGACATCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATTCCT 76939 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| ||||||| || ||| ||| | | | ||||| |||||||| Sbjct 76940 GTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GTCAAAAGGTTCGATAGG 76997 Query 271 CC 272 || Sbjct 76998 CC 76999 >seq76 Length=358459 Score = 289 bits (320), Expect = 5e-76 Identities = 233/278 (84%), Gaps = 5/278 (2%) Strand=Plus/Minus Query 6 AGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGAC 64 ||| | ||||| || || |||| || |||||||||||||||||||||| ||||| ||| Sbjct 122254 AGCAGGATTACTATCGGAACGACCAGTTATCAGTAGGGTAAAACTAACCTATCTCACGAC 122195 Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||| || ||||||||||||||| | | ||||||||||| |||||||| ||||||| Sbjct 122194 GGTCTGAATGCAGCTCACGTTCCCTGCTGGCGGGTGAACAATTCAACGCTTGGCGAATTC 122135 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||| Sbjct 122134 TGCTTCGCAATGATAGGAAGAGCCGATATCAAAGGATCAAAAAGCGACGTCGCTATGAGT 122075 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||| Sbjct 122074 GCTTGGCTGCCACAAGCAAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAA 122015 Query 245 --TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| | | | |||||||||||||||| ||||| Sbjct 122014 CTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 121979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392002816