Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05]
936 sequences; 201,220,334 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq41 320 3e-85
seq139 313 4e-83
seq129 300 3e-79
seq76 289 5e-76
>seq41
Length=512037
Score = 320 bits (354), Expect = 3e-85
Identities = 244/284 (86%), Gaps = 7/284 (2%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 404768 TACTGAGCAGGATTACTATCGCAACGACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 404827
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||| || | ||||||||||||| |||||| ||
Sbjct 404828 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGGCGGGTGAACAATCCGACGCTTGGCG 404887
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 404888 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTCGCTA 404947
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||| | |
Sbjct 404948 TGACCGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACGCCTCTTG-C 405006
Query 240 TCAAA---TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
| ||| ||| | | | |||||||||||||||| |||||
Sbjct 405007 TGAAAGCTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 405048
>seq139
Length=139565
Score = 313 bits (346), Expect = 4e-83
Identities = 242/283 (86%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 117952 TACTGAGCAGGATTACTACCGCAACGACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 117893
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||| |||||||||||| | | || | ||||||||||||| |||||| ||
Sbjct 117892 ACGACGGTCTAAATCCAGCTCACGTTTCTTGTTGGCGGGTGAACAATCCGACGCTTGGCG 117833
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 117832 AATTCTGCTTCGCAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCGACGTCGCTA 117773
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 117772 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 117713
Query 240 TCA-AAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
| ||| ||| | | | |||||||||||||||| |||||
Sbjct 117712 GAATAATCTTCAA--GCCAAAAGGATCGATAGGCCTTGCTTTC 117672
>seq129
Length=157023
Score = 300 bits (332), Expect = 3e-79
Identities = 213/242 (88%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 76760 ATCAGTAGGGTAAAACTAACCTGTTTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 76819
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 76820 GGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACA 76879
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
|||||||||| |||||| || |||||||||||||||||| |||||||||||||||| |||
Sbjct 76880 TCGAAGGATCGAAAAGCGACATCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATTCCT 76939
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||| ||||||| || ||| ||| | | | ||||| ||||||||
Sbjct 76940 GTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GTCAAAAGGTTCGATAGG 76997
Query 271 CC 272
||
Sbjct 76998 CC 76999
>seq76
Length=358459
Score = 289 bits (320), Expect = 5e-76
Identities = 233/278 (84%), Gaps = 5/278 (2%)
Strand=Plus/Minus
Query 6 AGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGAC 64
||| | ||||| || || |||| || |||||||||||||||||||||| ||||| |||
Sbjct 122254 AGCAGGATTACTATCGGAACGACCAGTTATCAGTAGGGTAAAACTAACCTATCTCACGAC 122195
Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124
||||| || ||||||||||||||| | | ||||||||||| |||||||| |||||||
Sbjct 122194 GGTCTGAATGCAGCTCACGTTCCCTGCTGGCGGGTGAACAATTCAACGCTTGGCGAATTC 122135
Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184
||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 122134 TGCTTCGCAATGATAGGAAGAGCCGATATCAAAGGATCAAAAAGCGACGTCGCTATGAGT 122075
Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244
||||||||||||||||| ||||||||||||||||||||||||| ||||||| || |||
Sbjct 122074 GCTTGGCTGCCACAAGCAAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAA 122015
Query 245 --TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
||| | | | |||||||||||||||| |||||
Sbjct 122014 CTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 121979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854392002816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |