Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq139 116 4e-24 seq177 113 5e-23 >seq139 Length=139565 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||| ||||||| ||||||||| | | ||||||||| ||| || |||||| | Sbjct 82555 ACGTTTGCTTTGAATAAATTAGAGTGCTTAAAGCAGGCTGTCTTCGCCTGAATACTGTGT 82614 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--G 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 82615 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 82672 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||||||| || || || | ||||| || | |||||||||||||| Sbjct 82673 TAATGATTAATACGGACAGATGGAGGCATTTGTATTGCGACGTTAGAGGTGAAATTCTTG 82732 Query 184 GAT 186 ||| Sbjct 82733 GAT 82735 >seq177 Length=65808 Score = 113 bits (124), Expect = 5e-23 Identities = 138/183 (75%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||| ||||||| ||||||||| | | |||||||| ||| || |||||| | Sbjct 15226 ACGTTTGCTTTGAACAAATTAGAGTGCTTAAAGCAGGTTGTCTTCGCCTGAATACTGTGT 15285 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--G 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 15286 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 15343 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 15344 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 15403 Query 184 GAT 186 ||| Sbjct 15404 GAT 15406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511995357440