Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq38 102 6e-17 seq116 100 2e-16 >seq38 Length=2292016 Score = 102 bits (112), Expect = 6e-17 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 61191 ACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 |||||| ||| |||||| | || |||||||| ||||| || |||||||||||||| || Sbjct 218766 ACATTT-ATTTCACATGTCCTTGCATTCTTTGCTGCTTCTGATGGTATCGTCAATGAAAA 218824 Query 61251 TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTT 61310 | | | ||||| || ||||| || ||||| |||| || || || || || || || Sbjct 218825 TCTTGTAGAACGGTTTAGTCAGGAAGTACAAGTTACGGAAGCTCGATGCTTTTATGGATT 218884 Query 61311 CCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||| | || ||||| ||||| || || || ||||| | | || || || || || || Sbjct 218885 CCAAGTGGCTATGGAAAATGTTCATTCTGAAATGTATTCTCTACTAATAGACACTTATAT 218944 Query 61371 CAGGGA 61376 ||| || Sbjct 218945 CAGTGA 218950 >seq116 Length=4125705 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||| || |||| || |||||| || |||||| || ||||| || || ||||| ||| Sbjct 2592140 TTGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTG 2592199 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | || ||||| | ||| |||||||| || |||||||| ||| || |||| | Sbjct 2592200 CTTTTAATTGTGCCTAGATTTTGTTGATTCGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGG 66170 ||||||||||| || || |||||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAACTTGGG 2592287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || || || |||||||| ||||||||||||||||||| || || || || | || Sbjct 2592684 TCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAATACATTGCAAAAGCACCTGGT 2592743 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 | ||| |||||||| ||||| || ||||| ||| || | ||||| | ||| ||| Sbjct 2592744 CTTTTATTACCACCTTGATCGACATAACGAGCAGTATTATTATATACACGAATCATGGGT 2592803 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || | || ||||||| ||||| ||||| Sbjct 2592804 ACCAAACCATTAGATTCTCCATTAGTGCC 2592832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563464743040