Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq48925 230 2e-55 seq48068 105 5e-18 >seq48925 Length=1097090 Score = 230 bits (254), Expect = 2e-55 Identities = 1134/1793 (63%), Gaps = 33/1793 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || |||||||| || | ||| | | | ||| ||||| || || Sbjct 839828 TCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCTGTT 839887 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| || || || || ||||| | |||||| ||||||| || || Sbjct 839888 TTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGTTCA 839947 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||||||| || || ||||| ||||| || || || | || | || || ||||| Sbjct 839948 GCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCCATT 840007 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | ||| | | || |||||||| || || || |||| | | || || Sbjct 840008 TTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATATCTTTT 840067 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATCGA 65376 || || |||||| | || | |||||| | ||| | || | |||| ||| Sbjct 840068 GGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTA-TCAGATTCTTCATGTC 840126 Query 65377 CTCTGACCACAAACCCAAATC-GATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| | | | |||| | || || ||| | || | || |||| Sbjct 840127 TTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAA-TGATGGTTAACAACCTGGA 840185 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || |||| ||||| | || ||||| || |||| ||||||||||| ||| Sbjct 840186 ATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTCAT 840245 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | || |||| ||||| || ||||| || || ||||| ||||| | | | ||| || | Sbjct 840246 TATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAGAAGTGAATTGC 840305 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACA--TCGGTTTAT 65612 | | ||| | | |||| || | || | | | || ||||||| | || ||| Sbjct 840306 GGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACC-AGTTCCAGAGATCAGTTGGA 840364 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | | ||| ||||| || | ||||| | | || || || || || Sbjct 840365 GTTTTA--TCC------CACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTT 840416 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | || || |||||||| | | || |||| ||| |||| || | ||| | Sbjct 840417 CATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGT 840476 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 |||| ||||| ||||| || || | ||||||| | ||| || || || || || || | Sbjct 840477 AATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAA 840536 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | | ||| || ||||| || || || | ||||| ||||||||||| || || | |||| Sbjct 840537 TGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGAC 840596 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 ||| || ||| | | || ||||| || ||||| |||| | ||| ||||| ||| | Sbjct 840597 GCATGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAA 840656 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 || |||| | | | || | ||| | || ||| |||||| Sbjct 840657 GGTTCTGTGTGATTATCTTTGTGACTTCTTTCAACT-TTATAAAGTTGTATGTTTT---- 840711 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 ||| | | |||||| | | |||| || || | || || |||| Sbjct 840712 -ATCTTCATTA---------ACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAG 840761 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | | || || | | || || || |||||||||||||||| ||||||||| ||||| Sbjct 840762 CAACTTCATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGG 840821 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | ||| | ||||||||| || | ||| |||| ||| || |||| |||||| || | Sbjct 840822 TGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTG 840881 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTAC 66212 |||| || || ||||| | || || || || | ||| || | | || || | | Sbjct 840882 TGCCCGTTTCCACTTGTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACT-TGC 840940 Query 66213 GTACCGCCCTACCTTTGC-GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 || | ||| | |||| || | ||| || | ||| || ||| ||||| Sbjct 840941 TTAACAAATCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAA 841000 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || | |||| || || | || |||||||| || ||| |||| | |||| Sbjct 841001 CAATCAGCAAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCT 841060 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| |||||||| ||| || ||||| | |||||| || | || | ||||| | Sbjct 841061 ACACGTTTCATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACC 841120 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 || || |||| ||| || || || | |||||||| | || | ||||| ||| Sbjct 841121 TCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGT 841180 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || ||||| || || || | ||| ||||| ||| ||||||||||| || | || Sbjct 841181 TCAAGGTAAATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCT 841240 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||| ||| | || | |||||| || ||||| || || || ||||| || || | Sbjct 841241 GTATTATTGTACACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCT 841300 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 ||| || ||| ||||| || ||||||| || || |||||||| || | || Sbjct 841301 ATGTAGGTACCTTTTGCCCTGATGCAATGAACATGAAGGCCTATACCACCAGCAGATTTT 841360 Query 66632 GAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 ||||| ||||| | | ||| |||| || |||||| ||| | || || Sbjct 841361 GAGATTAAGGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATA 841420 Query 66692 GTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGT 66751 | | ||| |||| ||| | ||| ||| | || || || || ||||| | ||||| Sbjct 841421 GCTATAAGGAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGA 841480 Query 66752 GTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATG 66811 | || || ||||| || | ||| | ||||||| || || ||| | | ||||||| Sbjct 841481 CTGGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATG 841540 Query 66812 TTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTC 66864 | ||| || || || || | | ||||||||| | | ||||| | ||| Sbjct 841541 TCTTCACCGTGGATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTC 841593 >seq48068 Length=254185 Score = 105 bits (116), Expect = 5e-18 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || || ||||||||||||||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 224691 CACTTTATTAAACATGTGTTGGCATTTTTTGCTGCTTCTGATGGTATAGTAAATGAGAAT 224750 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGC---GTTGTTTCTACGGC 61308 ||| | || || || | || || || ||| |||| | || ||| ||| || || Sbjct 224751 TTAGTAGAGCGATTTTCACAAGAAGTTCAA--ATCGGTGAAGCAAGGTTCTTT-TATGGA 224807 Query 61309 TTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTAC 61368 || || || || ||||| ||||| ||||| ||||||||| | | || ||||| || Sbjct 224808 TTTCAAATCGCTATGGAAAATGTACACTCTGAGATGTACTCCTTGTTGATTGATACATAT 224867 Query 61369 ATCAGGGA 61376 || ||||| Sbjct 224868 ATTAGGGA 224875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAA 61454 ||||||||||| | || || |||| || ||| ||| || || ||||| || ||| Sbjct 225192 TTGTTCAATGCAGTTGAAACTTTACCATGTGTAAAGAAGAAGGCAGACTGGGCACTGCAA 225251 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| |||| | || || | ||||| ||| || | | || ||||| | || || Sbjct 225252 -TGGATCGCCAGCAAGACAGCAAACTTTGGGGAAAGAATAGTTGCCTTTGCTGCTGTGGA 225310 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | || || ||| ||||| |||| || ||||||||||| || || | || Sbjct 225311 AGGAATCTTCTTTTCTGGTAGCTTTGCATCAATTTTCTGGTTGAAGAAGCGCGGCTTAAT 225370 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||| ||||||||||||||||||||| | || || | || |||| Sbjct 225371 GCCTGGTCTGACCTTCAGCAATGAGCTTATTTCTAGGGATGAGG 225414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397261836237680