Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2316 199 3e-46 seq348 118 8e-22 >seq2316 Length=6356476 Score = 199 bits (220), Expect = 3e-46 Identities = 1119/1778 (63%), Gaps = 39/1778 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || ||||||||||| || ||||||||||| | ||| | | | ||| ||||| || || Sbjct 2965200 TCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCTGTT 2965259 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | || ||| || || || || || |||| |||||| |||||||||| || Sbjct 2965260 TTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGTTCA 2965319 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||||||| || || || || ||||| || || || | ||| ||||| |||||||| Sbjct 2965320 GCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCCATT 2965379 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | ||| || | || |||||||| || || || |||| | | || || Sbjct 2965380 TTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTCCTTT 2965439 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCA-CGACGTGCAATAATGCGATTACGCATCGA 65376 || || ||| || | || | |||||| | ||| ||| || |||| ||| Sbjct 2965440 GGTATACGCTCGATATTTTGAATGGAACCATTGTTGTG-AATTATCAGATTTTTCATGTC 2965498 Query 65377 CTCTGACCACAAACCCAAAT-CGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| | | || ||| | | | | ||| ||| | || | || |||| Sbjct 2965499 GTCGTCCCATAAATCTGCCTGCGTCAAG-TCTCGCAACAAATGATGGTTAACAACCTGGA 2965557 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || |||| ||||| | || ||||| || || | ||||||||||||||| Sbjct 2965558 ATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTCAT 2965617 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 |||| || | |||||||| ||||| || || ||||| ||||| | || | || || | Sbjct 2965618 TGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATTGC 2965677 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 ||| || | | |||| || | || | ||||| ||| | | | | | Sbjct 2965678 GCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGA---GATCA-GAT 2965733 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGA 65675 || | | |||||| || | ||||| | || || || || || Sbjct 2965734 GGAGTTTTA--TCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCAT 2965791 Query 65676 AACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 | || || ||| ||| ||| ||| || |||| || |||| || | ||| | || Sbjct 2965792 ATGTACTATAAACT-CCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAA 2965850 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || || || ||||| || || | ||||||| | ||||| || || || || || || Sbjct 2965851 TATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATG 2965910 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | |||||| ||||| || || || | ||||| |||||||| || || || | || ||| Sbjct 2965911 CGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGC 2965970 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 | |||||| | || || || || ||||| |||| | ||| ||||| ||| | Sbjct 2965971 ATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGG 2966030 Query 65915 TTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGA 65974 || |||| | | | || || ||| | || ||| |||||| | Sbjct 2966031 TTTTGTGTGATTATCTTTGTGACTTCTCTCAACT-TTGTAAAGTTGTATGTTT-----TA 2966084 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 || | | |||||| || | |||| ||| || | || || ||||| Sbjct 2966085 TCTTCATT---------AACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCA 2966135 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 | || || | | || || || |||||||| ||||||| ||||||||| |||||| Sbjct 2966136 ACTTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTG 2966195 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || | ||| | |||||| || || | || || | ||| || || | ||| || || ||| Sbjct 2966196 CCAAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTG 2966255 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTTCACC 66208 || || || ||||| | || ||||| || | ||| | |||| || | ||| | Sbjct 2966256 CCTGTTTCCACTTGTGCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCG-GACTT-GCT 2966313 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 || | | | | ||| ||| || || | || | ||| || ||| ||| Sbjct 2966314 TAACAAATCTCTTTTCCT----CTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCC 2966369 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || |||| |||| || || | || || ||||| | ||| |||| | | Sbjct 2966370 CAACAGTCGGCAAGACCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTT 2966429 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || ||||| |||||| | ||| || ||||| | || || || || || | |||| Sbjct 2966430 TCAACACGCTTCATAAACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTG 2966489 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || |||| ||| || || || | |||||||| | || | ||||| Sbjct 2966490 ACTTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAG 2966549 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 ||||| | ||| || || || | || |||||| ||| |||||||| || || | Sbjct 2966550 GGTTCTAAGTAAATAGCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTT 2966609 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || ||| ||| | || |||||||| ||||| || || || ||| || || || || Sbjct 2966610 GCTGTATTATTGTACACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCT 2966669 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 | || | ||| ||| | ||| ||||||| || ||||| ||||| || | Sbjct 2966670 GCTATATAAGTACCTTTTGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGAT 2966729 Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 || ||||| ||||| | | ||| |||| || |||||| |||| | || Sbjct 2966730 TTTGAGATTAATGCACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTC 2966789 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 || | | |||| |||| ||| | ||| ||| | || || || || ||||| | ||| Sbjct 2966790 ATAGCTATGAGGAAGCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTG 2966849 Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCA 66808 || | || || |||||||| | ||||| | ||||| || || ||| | | |||| Sbjct 2966850 GGACTGGCATGTGTAAAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCA 2966909 Query 66809 ATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAG 66846 |||| ||| ||||| || || | || |||||||| Sbjct 2966910 ATGTCTTCACCATGGATTCCAATTGAGACCCGCATCAG 2966947 >seq348 Length=4065129 Score = 118 bits (130), Expect = 8e-22 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| || |||||||| |||||||| | ||||||||| | ||| ||| Sbjct 3296812 GAACCACTGTTGCGTGAAAATCCTCGGCGTTTCGTCATCTTCCCCATCCAATATCCTGAT 3296871 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| |||||||| |||||||| |||||||| || ||| | Sbjct 3296872 ATCTGGCAAATGTACAAAAAGGCAGAAGCTTCATTCTGGACAGTGGAGGAAGTTGATCTA 3296931 Query 61147 TCCAA 61151 ||||| Sbjct 3296932 TCCAA 3296936 Score = 113 bits (124), Expect = 4e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||||||||||||| ||||| |||| ||||| || || || ||||| || | Sbjct 3297411 TTGTTCAATGCCATTGAGACTTTACCTTGTGTGAAAAAAAAGGCAGACTGGGCATTACAA 3297470 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| |||| | || || | ||||| || | ||| | | |||||||||| || || Sbjct 3297471 TGGATCGCCAGCAAGACAGCAAACTTTGGAGAGAGGATAG-TTGCATTTGCGGCTGTAGA 3297529 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | || || ||| ||||| |||| || ||||||||||| ||||| | || Sbjct 3297530 AGGCATCTTCTTTTCCGGAAGTTTTGCATCAATATTCTGGTTGAAGAAGCGTGGCTTGAT 3297589 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||||||| |||||||||||||||| |||| || | || |||| Sbjct 3297590 GCCCGGTTTGACCTTCAGCAATGAACTGATTTCTAGGGATGAGG 3297633 Score = 107 bits (118), Expect = 2e-18 Identities = 137/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||||| || |||||||| |||||||| ||||| || || || ||||| || ||||| ||| Sbjct 3297060 CATTTTATAAAACATGTCTTGGCGTTTTTTGCTGCCTCCGATGGTATTGTTAATGAAAAT 3297119 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | | || || || | || || || ||| | || || | | || ||||| ||| Sbjct 3297120 CTGGTAGAGCGATTTTCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTACGGATTC 3297179 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTA--CAGTGTTCTCATCGATACGTACA 61369 || ||||| ||||||||||| ||||| |||||||| || || || || ||||| || | Sbjct 3297180 CAAATTGCTATGGAGAATGTACACTCTGAGATGTATTCATTG--CTGATAGATACTTATA 3297237 Query 61370 TCAGGGA 61376 |||| || Sbjct 3297238 TCAGAGA 3297244 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || ||||| |||| || ||||| || ||||||||||| |||| || ||| ||||| Sbjct 3299061 GATGCGGTTGCTATTGAGCAGGAGTTCCTGACTGACGCGCTGCCTGTACGGCTCCTCGGC 3299120 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 ||||| |||| ||| ||||||||||| ||||| |||||||| ||| | ||| | || ||| Sbjct 3299121 ATGAACTGTGAACTTATGTCGCAGTACATTGAGTTTGTTGCTGACAGACTGCTTGTGGAT 3299180 Query 61825 TTG 61827 || Sbjct 3299181 CTG 3299183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549229075360