Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1114 219 3e-52 seq1390 149 5e-31 seq4120 118 8e-22 >seq1114 Length=8361563 Score = 219 bits (242), Expect = 3e-52 Identities = 1124/1781 (63%), Gaps = 45/1781 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| ||||||||||| || | ||| | | | ||||||||| || || Sbjct 3013646 TCAACTGTGAACTGAATCGCATTAGCGGCAGGCTTTATGCGTAAATAGTACATTCCTGTT 3013705 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| || || || || ||||| | |||||| |||||||||| || Sbjct 3013706 TTCAGACCCATTTTCCATGCGTAAAAGTGAATCGAAGTCAATTTTCCATAATTCGGTTCA 3013765 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||||||| || || || || ||||| || || || | ||| | ||| |||||||| Sbjct 3013766 GCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCCATT 3013825 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | ||| | | || || ||||| || || || || | | || || || Sbjct 3013826 TTAATTGTTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAACTCTCTTATGTCCTTT 3013885 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAATAATGCGATTACGCATCGA 65376 || || |||||| | || | |||||| | ||| ||| || |||| ||| Sbjct 3013886 GGTATACGCTCAATATTTTGAATGGAACCATTATTGTG-AATTATAAGATTCTTCATGTC 3013944 Query 65377 CTCTGACCACAAACCCAAAT-CGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| || | | |||| | | | | || ||| | || | || |||| Sbjct 3013945 TTCATCCCATAAATCCGCCTGTGTTAAG-TCTCGCAATAAATGATGGTTAACAACCTGGA 3014003 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || |||| ||||| | || ||||| || |||| ||||||||||| ||| Sbjct 3014004 ATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAATGGTTCAAAGGACTCAT 3014063 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | || |||| ||||| || |||||||| || ||||| ||||| | || | |||||| | Sbjct 3014064 TATTTCCTAAGATTTGTGCTGTAGATGCTGTAGGCATTGGAGCTAATAAAAGTGAGTTGC 3014123 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCC--ACATCGGTTTATC 65613 | | || | | |||| || | || | ||||| || | ||| || Sbjct 3014124 GAAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCATAGATCAGT----- 3014178 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || | | |||||| || | ||| | | | || || | || || Sbjct 3014179 -TGGAGTTTTA--TCCCACATGTCATATTGTAAGATGCCTTGGCTTGTTGGACTTCCTTC 3014235 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | || || |||||||| | | || |||| ||| |||| ||| | ||| | | Sbjct 3014236 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCCTCTAATGCTCCGTA 3014295 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 ||| || || ||||| || || | ||||||| | ||| || || || || || || || Sbjct 3014296 ATATATAGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 3014355 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || || ||||| || || || | |||||| ||||||||||| || || | || || Sbjct 3014356 GCGCAATAGTACAAATGTATCAGCTAAACCTTGCACTCCAATACCTATAGGTCTGTGTCG 3014415 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || || || | || ||||| || ||||| |||| | ||| ||||| ||| | Sbjct 3014416 CATGTTAGAGTTCTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 3014475 Query 65914 ATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGA 65971 || |||| | | | | || || ||| | || ||| |||||| Sbjct 3014476 GTTTTGTGTGA--TCGTCTTTGTAACTTCTTTCAACT-TTGTAAAGTTGTATGTTT---- 3014528 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 ||| | || |||||| || | |||| || || | || || || Sbjct 3014529 -TATCTTCATTG---------ACAAACCTGTTTAATGCAATTGAAGCTAAATTACAAACT 3014578 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 || | || || | | || ||||| |||||||| ||||||| ||||||||| || Sbjct 3014579 GCAACTTCATCTGCTGAAGTGTACTCAACAATTTCTGTGCACAAATTACTGCATTTAATT 3014638 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 ||||| | ||| | ||||||||| || | || |||| ||| ||||||| |||||| || Sbjct 3014639 GTGCCAAGATTTTTTTGATTACTTTTTCTGTTACATGAATCTTTGTACAGCATGTATGGT 3014698 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCTTC 66205 ||||| || || ||||| | || || || || | ||| | |||| || | ||| Sbjct 3014699 GTGCCTGTTTCCACTTGTGCTTCTATTATTGCTTTCCATAATTCTTGAGCTCG-GACTT- 3014756 Query 66206 ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 | || || || || |||| || | ||| || | ||| || ||| Sbjct 3014757 -GCTTA---ACAAATCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCT 3014812 Query 66266 CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCC 66325 ||||| || | |||| || || | || |||||||| || ||| |||| Sbjct 3014813 CCCCAACAATCAGCAAGACCCGGGCAATCATGAGGACACATTAGACTCCACATTTCATCT 3014872 Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 | ||| || || |||||||| ||| || ||||| | ||| || || | || | |||| Sbjct 3014873 TTTTCAACCCGCTTCATAAATAAATCTGGGATCCATAAGGCATAAAATAATTCTCTTGCT 3014932 Query 66386 CGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 | ||| || |||| ||| || || || | |||||||| | || | ||| Sbjct 3014933 CTGACCTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGC 3014992 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 || ||||| ||||| || ||||| | || |||||| ||| |||||||| || || Sbjct 3014993 CAAGGTTCAAGGTAAATAGCGAATGCTCCTGGTCGTTTGTTGCCTCCTTGGTCAACATAC 3015052 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 | || ||| ||| | || | |||||| || || || || || || ||||| || Sbjct 3015053 CTGGCTGTATTATTGTACACTCTCAACATTGGCACAAGGCCATTGGAAACACCATTAGTA 3015112 Query 66566 CCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCC 66625 || | || | ||| ||||| || || |||| || || |||||||| || Sbjct 3015113 CCTGCTATATATGTACCTTTTGCCCTGATGCAATGTACATGAAGTCCTATACCACCAGCA 3015172 Query 66626 GTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCC 66685 | || ||||| ||||| | | ||| |||| || |||||| |||| | Sbjct 3015173 GATTTGGAGATTAGGGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTGTCATCT 3015232 Query 66686 TTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGG 66745 || || | | |||| |||| ||| | ||| ||| | || || ||||| || || | Sbjct 3015233 TTCATAGCTATGAGGAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCGGCGGAAAACAAT 3015292 Query 66746 GTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCA 66805 ||||| | || || || || || | ||||| ||||||| || || || | ||| Sbjct 3015293 GTGGGACTGGCATGAGTGAAATATTTTTCAGACAACAAATTGTAAGTTTCAATAGCTGCA 3015352 Query 66806 TCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAG 66846 ||||||| ||| ||||| || || | || || |||||| Sbjct 3015353 TCAATGTCTTCACCATGGATTCCAATTGAGACTCTCATCAG 3015393 >seq1390 Length=76047 Score = 149 bits (164), Expect = 5e-31 Identities = 553/856 (65%), Gaps = 23/856 (3%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||| || | ||| | ||||| ||| ||||||||| | || ||| ||| || ||| Sbjct 54226 TTCCCTATTAAATATCACGATATCTGGAAGATGTACAAACAAGCCGAATGTTCTTTTTGG 54285 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT 61185 || | || || || ||| | || || | |||| ||| | |||| | | | Sbjct 54286 ACCGCTGAAGAAGTTGATCTTTCAGCCGATTTATATGATTGGAACTCTTTAACACCAGAT 54345 Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| | | || || |||| | | || || || || ||||| || ||||| || ||| Sbjct 54346 GAAAGATACTTTGTTTCACATATTCTTGCATTTTTCGCTGCTTCTGATGGTATTGTAAAT 54405 Query 61246 GAGAAT-TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 |||| || ||| || |||| || |||| || | | ||||| ||||| || Sbjct 54406 ATGAATCTTGTTGAAAGGTTTTCCG-AGGAAGTCACCATTTTAGAGGCAAAATGTTTTTA 54464 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 || |||||| | | || || ||| |||| || || ||||| | | || || ||||| Sbjct 54465 TGGATTCCAGGTAGTTATCGAAAATATCCATTCTGAAATGTATTCTTTACTTATAGATAC 54524 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTC--AATGCCATCGAGACGATAC 61420 ||| || || || | || ||| || || | ||| ||||| || | || |||| Sbjct 54525 GTATATTAGTGATCCGGACGAA----AAAAATCATCTTCTTAATGCTATAAACACAATAC 54580 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | | | || ||| || |||||||| || || ||||| | | || |||| | Sbjct 54581 CATCTATTAAAAAGAAGGCTGATTGGGCATTGAAATGGATAAAAGACAAAAAATCTACTT 54640 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| | || | | |||||||| ||||| || | || || |||||| | |||| Sbjct 54641 TTGCTACCAGAGTTATCGCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGGAGCATTTG 54700 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | | ||||| ||||| |||||| | || || ||||| ||| || | || ||||| Sbjct 54701 CTTCGATCTTCTGGTTAAAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAAC 54760 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 | || || || || || ||||||| || |||||| |||| || || | |||| Sbjct 54761 TCATTAGCCGAGATGAAGGTCTGCATTGCGAATTTGCTTGTTTGTTA---AATAGTTATC 54817 Query 61661 TGGTGAATCG-TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 | | ||| | || | || | | || |||||| |||||| |||| ||| Sbjct 54818 TTATCAATAAATGCGAT--AAGATCAAG-----GATATTGTTGTTGAGGCAGTAAAAATC 54870 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 ||||| |||||| | | ||| ||| || || || || || |||||||| ||| Sbjct 54871 GAACAAGAATTTTTAAGTGAAAGTTTACCTGTTAATCTTATTGGAATGAATTGCAAACTT 54930 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA-TTTGGGTATGAAGCG 61838 |||| | |||||||||||||| |||||| | | ||| | | ||||| | | | Sbjct 54931 ATGTGCAATTATATTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGGGAAG-ATAA 54989 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 ||| || || || || || || ||||||||||| | ||||| || | ||| || || Sbjct 54990 GATTTACAACACAGCCAATCCTTTCGATTTCATGGAAAATATTTCACTTGTTGGTAAAAC 55049 Query 61899 GAATTTTTTCGAGAAA 61914 || || || || ||| Sbjct 55050 AAACTTCTTTGACAAA 55065 >seq4120 Length=16292344 Score = 118 bits (130), Expect = 8e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || || ||||||||||| ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 7436589 CACTTTATTAAACATGTTTTGGCATTTTTTGCTGCTTCTGATGGTATAGTTAATGAGAAT 7436530 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 || | || || || | || || || ||| | || || | | || || || ||| Sbjct 7436529 CTAGTAGAGCGATTTTCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTATGGATTC 7436470 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||||| ||||||||||| ||||| ||||||||| | || || ||||| ||||| Sbjct 7436469 CAAATTGCTATGGAGAATGTACACTCTGAGATGTACTCCTTGCTGATTGATACTTACATT 7436410 Query 61372 AGGGA 61376 ||||| Sbjct 7436409 AGGGA 7436405 Score = 113 bits (124), Expect = 4e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAA 61454 ||||||||||| | || || |||| || ||| ||| || || ||||| || ||| Sbjct 7436229 TTGTTCAATGCTGTTGAAACTTTACCCTGTGTAAAGAAGAAGGCAGACTGGGCACTGCAA 7436170 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 | ||||| |||| | || || | ||||||||| | | | || ||||| | || || Sbjct 7436169 T-GGATCGCCAGCAAGACAGCAAACTTTGGTGAAAGGATAGTTGCCTTTGCTGCTGTGGA 7436111 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || || |||| ||||| |||| || ||||||||||| ||||| | || Sbjct 7436110 GGGCATCTTCTTTTCTGGAAGCTTTGCGTCAATATTCTGGTTGAAGAAGCGTGGCTTAAT 7436051 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||| ||||||||||||||||||||| |||| || | || |||| Sbjct 7436050 GCCTGGTCTGACCTTCAGCAATGAGCTGATTTCTAGGGATGAGG 7436007 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||| ||||| || || ||||| | ||||||||| | ||| ||| Sbjct 7436858 GAACCACTCTTGCGAGAAAATCCGCGCCGATTCGTCATCTTCCCCATCCAATATCCTGAT 7436799 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| |||||||| |||||||| || ||||| || ||||| Sbjct 7436798 ATCTGGCAAATGTACAAAAAGGCTGAAGCTTCATTCTGGACTGTAGAGGAAGTTGATTTA 7436739 Query 61147 TCCAA 61151 ||||| Sbjct 7436738 TCCAA 7436734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541001654080