Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq27620 104 2e-17 seq39349 100 2e-16 seq3858 87.8 1e-12 >seq27620 Length=20860 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||||||||| || || || || || ||| ||||||||| ||||| || || | Sbjct 18059 TGTTCAATGCCATTGAAACAATGCCTTGTGTAAAGAAGAAAGCGGACTGGGCGTTGAAAT 18118 Query 61457 GGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||| | | | ||| | ||||| |||| |||||| | | || ||||| | ||||| Sbjct 18119 GGAT-AGCTGATCAAAGCGCTACTTTTGCTGAACGGGTCATTGCGTTTGCTGCCGTCGAA 18177 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 ||| | || || ||| ||||| || || || ||| | || || | || || ||| Sbjct 18178 GGTATTTTCTTTTCCGGAAGCTTTGCTGCGATATTCTGGCTTAAAAAGAGAGGCCTAATG 18237 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 || || ||||| ||||| ||||| |||||||| | ||||| Sbjct 18238 CCTGGACTGACTTTCAGTAATGAACTGATATCAAGAGACGA 18278 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || ||| ||||||| || || | || ||||| |||||| |||| || ||||| ||||| Sbjct 18426 GAAATTATTCGTGACGCTGTTAAAATAGAACAAGAATTTTTGACCGATGCTTTACCCGTA 18485 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 ||| | || || |||||| | | | ||||| | ||||||||||||||| ||||| | Sbjct 18486 TCAATGATTGGAATGAATAGCGAATTAATGAAGACGTATATTGAATTTGTAGCCGATAGA 18545 Query 61813 CTGTTGGTCGA 61823 ||||||| || Sbjct 18546 TTGTTGGTGGA 18556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| || | |||||| ||| || || || || ||||| || || || ||||| |||||| Sbjct 17785 GAAAAAAAATTCATTTCACACGTTTTAGCATTTTTTGCGGCATCTGATGGTATTGTCAAT 17844 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 || |||||| | || |||||| || || || ||| | | || || | | || ||| Sbjct 17845 GAAAATTTAGTCGAGCGTTTCTTTCAAGAAGTTCAAATTCCAGAAGCCAGATTCTTTTAC 17904 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 || || || || |||| || ||||| || || ||||||||||| | | || || || Sbjct 17905 GGATTTCAAATCACCATAGAAAATGTACATTCCGAGATGTACAGCTTATTGATAGACACC 17964 Query 61366 TACATCAGGGAGCGGGCGGAACG 61388 ||| | | ||| | || ||||| Sbjct 17965 TACGTTAAGGATCCAGCTGAACG 17987 >seq39349 Length=17693 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 |||||| |||||| || || || ||||| || || |||||||| |||||||| || || Sbjct 11164 TTCATTTCACATGTCTTAGCATTTTTTGCAGCCTCTGACGGTATTGTCAATGAAAACTTG 11223 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | |||||||| || ||||||||| | | || || | | ||| ||||| || || Sbjct 11224 GTCGAACGTTTTTTCCAAGAGGTGCAAATCCCCGAAGCCAGATTTTTTTACGGGTTTCAA 11283 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || | || || ||||| || || |||||||||||| | | || || || || |||| Sbjct 11284 ATAACAATTGAAAATGTACATTCAGAGATGTACAGTTTGTTGATTGACACTTATATCA 11341 >seq3858 Length=10210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| |||||||| |||| ||||| |||||||| |||| |||||| | || || Sbjct 7116 TACCTCATCAGGAGCACTATATTCGACGATTTCGGTACACAAATTACTACTTTTAATAGT 7057 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 || ||||| || ||||| || | |||||||||||| || || | |||||| || || Sbjct 7056 TCCTAAATTTTGATGATTGGATTTTCTATTGCATGCATCTTTATATAACATGTAAGGTGT 6997 Query 66154 GCCGGTCTCAACTTGGGACTC 66174 || || |||| ||| || || Sbjct 6996 CCCAGTTTCAATTTGCGAGTC 6976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397276784173280