Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq59859 325 6e-87 seq4527 167 4e-39 seq3973 140 5e-31 seq11719 127 3e-27 seq398369 84.2 3e-14 >seq59859 Length=9336 Score = 325 bits (360), Expect = 6e-87 Identities = 230/260 (88%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6205 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 6264 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118 |||||||||||||||||||||||| |||| ||| || ||||||||||||||||| | Sbjct 6265 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATA 6324 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| ||| || | | |||||||| |||||||||||||||||||||||| ||| Sbjct 6325 ACCAGCAA--ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAAT 6381 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 6382 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAA 6441 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 6442 GAAAGAGCTCTCAATCTGTC 6461 >seq4527 Length=2346 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2092 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 2151 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 2152 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 2191 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 186 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 244 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 245 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 288 >seq3973 Length=62819 Score = 140 bits (154), Expect = 5e-31 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 57581 CTATTTAGCAGAGGAGAGTCTCGTTCGTTATCGGAATTAACCAGACAGATCACTCCACCA 57522 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||||||||| |||||||||||| ||| ||||| ||||||||||| Sbjct 57521 ACTAAGAACGACCATGCACCACCGTCCACTGAATCGAGAAAGAGCTA 57475 Score = 80.6 bits (88), Expect = 4e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75 || ||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||| Sbjct 57938 CATTGTAGCGCGCGTGCGGCCCAGGGCATGTGAGGGCATCACAGACCTGTTATTGCTCTC 57879 Query 76 A 76 | Sbjct 57878 A 57878 >seq11719 Length=74388 Score = 127 bits (140), Expect = 3e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 ||||||| | ||||||||| |||| ||||||||||||||| || |||||||||||| Sbjct 42887 TTAGCAGAGGAGAGTCTCGTTCCTTATGGGAATTAACCAGACAGCTCGCTCCACCAACTA 42828 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||| ||||| |||||||||| |||||||||| Sbjct 42827 AGAACGACCATGCACCACCGTCCACTGAATCGAGAAAGAGCTCTCAATCTGTC 42775 >seq398369 Length=2686 Score = 84.2 bits (92), Expect = 3e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTC 75 || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| Sbjct 97 CATTGTAGCGCGCGTGCGGCCCAGGGCATCTGAGGGCATCACAGACCTGTTATTGCTCTC 38 Query 76 A 76 | Sbjct 37 A 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789260891295