Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq59859 390 2e-106 seq4527 163 5e-38 seq398369 91.5 3e-16 seq3973 91.5 3e-16 >seq59859 Length=9336 Score = 390 bits (432), Expect = 2e-106 Identities = 274/310 (88%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||| || || || || ||| | |||||||| Sbjct 6370 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 6311 Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6310 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 6251 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||| ||||||||||||||||||||||||||||| |||||| ||||| | ||||||||| Sbjct 6250 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCC 6193 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||| Sbjct 6192 GAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATT 6133 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| Sbjct 6132 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCT 6073 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 6072 GCCCTTTGTA 6063 >seq4527 Length=2346 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 249 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 191 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 190 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 133 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 132 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 74 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 73 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 31 >seq398369 Length=2686 Score = 91.5 bits (100), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 75 CTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTGA 131 ||||||| || | |||||| |||||| || | |||| |||||||||||||||||| Sbjct 1 CTTAGAGAGATTGACGGCTCTGAAGCCGTACGA-GAATGAGAGCAATAACAGGTCTGTGA 59 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||| ||||| ||||||||||||||||||||| || Sbjct 60 TGCCCTCAGATGCCCTGGGCCGCACGCGCGCTACAATG 97 >seq3973 Length=62819 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/101 (82%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTG 128 |||||||||| || | |||||| |||||| || | |||| ||||||||||||||| Sbjct 57839 CTTCTTAGAGAGATTGACGGCTCTGAAGCCGTACGA-GAATGAGAGCAATAACAGGTCTG 57897 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||| | ||| ||||||||||||||||||||| || Sbjct 57898 TGATGCCCTCACATGCCCTGGGCCGCACGCGCGCTACAATG 57938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 937948744960