Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pediculus_20humanus_20corporis_20[refseq_20GCF_5F000006295.1_202007- 04-23] 1,882 sequences; 110,781,312 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1701 118 4e-24 seq1616 118 4e-24 seq1512 118 4e-24 seq1202 118 4e-24 seq1111 118 4e-24 seq1015 113 2e-22 >seq1701 Length=264565 Score = 118 bits (130), Expect = 4e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 259498 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 259557 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 259558 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 259616 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| ||| || |||||| || ||| Sbjct 259617 GAGAGAGTTCAACAGTACGTGAAACCGTTCGGGGGTAAGCGCGTGAAAC 259665 Score = 93.3 bits (102), Expect = 2e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| ||||| |||||||| |||| ||| |||| ||| |||||| ||| Sbjct 260590 GTTGGGACCCGAGAGATGATGAACTATACCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 260649 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || | | ||||| |||||||||||||| | |||| |||||||||| Sbjct 260650 TGGAGGTCCGTCGAGATTCTGACGTGCAAATCGATCTCTTGAACTGGGCATAGGGGCGA 260708 >seq1616 Length=409602 Score = 118 bits (130), Expect = 4e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 402627 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 402686 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 402687 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 402745 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| ||| || |||||| || ||| Sbjct 402746 GAGAGAGTTCAACAGTACGTGAAACCGTTCGGGGGTAAGCGCGTGAAAC 402794 Score = 93.3 bits (102), Expect = 2e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| ||||| |||||||| |||| ||| |||| ||| |||||| ||| Sbjct 403700 GTTGGGACCCGAGAGATGATGAACTATACCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 403759 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || | | ||||| |||||||||||||| | |||| |||||||||| Sbjct 403760 TGGAGGTCCGTCGAGATTCTGACGTGCAAATCGATCTCTTGAACTGGGCATAGGGGCGA 403818 >seq1512 Length=772936 Score = 118 bits (130), Expect = 4e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 768237 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 768296 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 768297 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 768355 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| ||| || |||||| || ||| Sbjct 768356 GAGAGAGTTCAACAGTACGTGAAACCGTTCGGGGGTAAGCGCGTGAAAC 768404 Score = 93.3 bits (102), Expect = 2e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| ||||| |||||||| |||| ||| |||| ||| |||||| ||| Sbjct 769311 GTTGGGACCCGAGAGATGATGAACTATACCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 769370 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || | | ||||| |||||||||||||| | |||| |||||||||| Sbjct 769371 TGGAGGTCCGTCGAGATTCTGACGTGCAAATCGATCTCTTGAACTGGGCATAGGGGCGA 769429 >seq1202 Length=3420 Score = 118 bits (130), Expect = 4e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 1935 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 1876 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1875 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 1817 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| ||| || |||||| || ||| Sbjct 1816 GAGAGAGTTCAACAGTACGTGAAACCGTTCGGGGGTAAGCGCGTGAAAC 1768 Score = 93.3 bits (102), Expect = 2e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| ||||| |||||||| |||| ||| |||| ||| |||||| ||| Sbjct 852 GTTGGGACCCGAGAGATGATGAACTATACCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 793 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || | | ||||| |||||||||||||| | |||| |||||||||| Sbjct 792 TGGAGGTCCGTCGAGATTCTGACGTGCAAATCGATCTCTTGAACTGGGCATAGGGGCGA 734 >seq1111 Length=160291 Score = 118 bits (130), Expect = 4e-24 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 5432 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 5491 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 5492 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 5550 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| ||| || |||||| || ||| Sbjct 5551 GAGAGAGTTCAACAGTACGTGAAACCGTTCGGGGGTAAGCGCGTGAAAC 5599 Score = 93.3 bits (102), Expect = 2e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| ||||| |||||||| |||| ||| |||| ||| |||||| ||| Sbjct 6508 GTTGGGACCCGAGAGATGATGAACTATACCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 6567 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || | | ||||| |||||||||||||| | |||| |||||||||| Sbjct 6568 TGGAGGTCCGTCGAGATTCTGACGTGCAAATCGATCTCTTGAACTGGGCATAGGGGCGA 6626 >seq1015 Length=787439 Score = 113 bits (124), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || || |||| | | | ||||| |||||| Sbjct 401969 GAGTCGGGTTGCTTGGTAGTGCAGCCCAAAGCAGGTGGTATACTCCATCTAAGGCTAAAC 402028 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 402029 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGGACTTTGAA 402087 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 402088 GAGAGAGTTCAACAGTACGTGAAA 402111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079959631100