Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pediculus_20humanus_20corporis_20[refseq_20GCF_5F000006295.1_202007- 04-23] 1,882 sequences; 110,781,312 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1701 336 4e-90 seq1616 336 4e-90 seq1512 336 4e-90 seq1111 336 4e-90 >seq1701 Length=264565 Score = 336 bits (372), Expect = 4e-90 Identities = 247/284 (87%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG---GTCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | ||||| | | ||||| | |||||||||||||||||||||||||| Sbjct 263404 TACTGAGCAGGATTACTGTCGCAACGACGAAAGCCATCAGTAGGGTAAAACTAACCTGTC 263345 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 263344 TCACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGG 263285 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 263284 CGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGC 263225 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 263224 TATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 263165 Query 238 C-CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | || || | | || | | |||||||||||||||| ||||| Sbjct 263164 CTCTAAACTCTAGA-CGCCAAAAGGATCGATAGGCCCTGCTTTC 263122 >seq1616 Length=409602 Score = 336 bits (372), Expect = 4e-90 Identities = 226/250 (90%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 406480 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTT 406421 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 406420 TGATGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 406361 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 406360 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 406301 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGC-CTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| ||||||| || || || | | || | | |||||||||||||| Sbjct 406300 TGTGGTAACTTTTCTGACACCTCTTGCTCTAAACTCTAGA-CGCCAAAAGGATCGATAGG 406242 Query 271 CCACACTTTC 280 || ||||| Sbjct 406241 CCCTGCTTTC 406232 >seq1512 Length=772936 Score = 336 bits (372), Expect = 4e-90 Identities = 247/284 (87%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG---GTCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | ||||| | | ||||| | |||||||||||||||||||||||||| Sbjct 772094 TACTGAGCAGGATTACTGTCGCAACGACGAAAGCCATCAGTAGGGTAAAACTAACCTGTC 772035 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 772034 TCACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGG 771975 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 771974 CGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGC 771915 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 771914 TATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 771855 Query 238 C-CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | || || | | || | | |||||||||||||||| ||||| Sbjct 771854 CTCTAAACTCTAGA-CGCCAAAAGGATCGATAGGCCCTGCTTTC 771812 >seq1111 Length=160291 Score = 336 bits (372), Expect = 4e-90 Identities = 226/250 (90%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 9255 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTT 9196 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 9195 TGATGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 9136 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 9135 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 9076 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGC-CTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| ||||||| || || || | | || | | |||||||||||||| Sbjct 9075 TGTGGTAACTTTTCTGACACCTCTTGCTCTAAACTCTAGA-CGCCAAAAGGATCGATAGG 9017 Query 271 CCACACTTTC 280 || ||||| Sbjct 9016 CCCTGCTTTC 9007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383920192