Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pediculus_20humanus_20corporis_20[refseq_20GCF_5F000006295.1_202007- 04-23] 1,882 sequences; 110,781,312 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1701 414 3e-113 seq1616 414 3e-113 seq1512 414 3e-113 seq1111 414 3e-113 >seq1701 Length=264565 Score = 414 bits (458), Expect = 3e-113 Identities = 318/381 (83%), Gaps = 21/381 (6%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA-- 231 |||||||||| || ||||||| |||| || | ||||||||||||||||| || ||| Sbjct 262773 TCCGCTTCATCGAATAAGTAAGGAAACAATGAAAGTAGTGGTATTTCACTTTCGGCGACC 262714 Query 232 ---------------AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 | || ||||||||||| |||||||||||| ||| | ||| | Sbjct 262713 GGACCCGAAGACCCGACCGCCTCCCACTTATGCTACACCTCTCACGTCTCCTTACAGTGC 262654 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 262653 CAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCC 262594 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT----GGGAATCTCGTTAATCCA 392 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 262593 CTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGAACGCGGGAATCTCGTTAATCCA 262534 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262533 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 262474 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||| | |||| | |||||||||| || |||||| |||||||| Sbjct 262473 CTCCCGCCGTTTAAATGAGCTTTTTCGAATTTCTTCGTCTTCACATTCGATTCACTGGGC 262414 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 262413 AGAAATCACATTGCGTCAACA 262393 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| | | |||| |||||||||||||||||||| Sbjct 263075 CTTTTGCTCCACGCGAGGTTTCTGTCCACGCTGAGCTGGCCTTAGGACACCTGCGTTATT 263016 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| ||||||||||||||| || |||| || | |||||| Sbjct 263015 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAGTGTCTTCGAATCGGATC 262956 >seq1616 Length=409602 Score = 414 bits (458), Expect = 3e-113 Identities = 318/381 (83%), Gaps = 21/381 (6%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA-- 231 |||||||||| || ||||||| |||| || | ||||||||||||||||| || ||| Sbjct 405902 TCCGCTTCATCGAATAAGTAAGGAAACAATGAAAGTAGTGGTATTTCACTTTCGGCGACC 405843 Query 232 ---------------AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 | || ||||||||||| |||||||||||| ||| | ||| | Sbjct 405842 GGACCCGAAGACCCGACCGCCTCCCACTTATGCTACACCTCTCACGTCTCCTTACAGTGC 405783 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 405782 CAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCC 405723 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT----GGGAATCTCGTTAATCCA 392 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 405722 CTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGAACGCGGGAATCTCGTTAATCCA 405663 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405662 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 405603 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||| | |||| | |||||||||| || |||||| |||||||| Sbjct 405602 CTCCCGCCGTTTAAATGAGCTTTTTCGAATTTCTTCGTCTTCACATTCGATTCACTGGGC 405543 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 405542 AGAAATCACATTGCGTCAACA 405522 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| | | |||| |||||||||||||||||||| Sbjct 406185 CTTTTGCTCCACGCGAGGTTTCTGTCCACGCTGAGCTGGCCTTAGGACACCTGCGTTATT 406126 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| ||||||||||||||| || |||| || | |||||| Sbjct 406125 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAGTGTCTTCGAATCGGATC 406066 >seq1512 Length=772936 Score = 414 bits (458), Expect = 3e-113 Identities = 318/381 (83%), Gaps = 21/381 (6%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA-- 231 |||||||||| || ||||||| |||| || | ||||||||||||||||| || ||| Sbjct 771499 TCCGCTTCATCGAATAAGTAAGGAAACAATGAAAGTAGTGGTATTTCACTTTCGGCGACC 771440 Query 232 ---------------AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 | || ||||||||||| |||||||||||| ||| | ||| | Sbjct 771439 GGACCCGAAGACCCGACCGCCTCCCACTTATGCTACACCTCTCACGTCTCCTTACAGTGC 771380 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 771379 CAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCC 771320 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT----GGGAATCTCGTTAATCCA 392 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 771319 CTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGAACGCGGGAATCTCGTTAATCCA 771260 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771259 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 771200 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||| | |||| | |||||||||| || |||||| |||||||| Sbjct 771199 CTCCCGCCGTTTAAATGAGCTTTTTCGAATTTCTTCGTCTTCACATTCGATTCACTGGGC 771140 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 771139 AGAAATCACATTGCGTCAACA 771119 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| | | |||| |||||||||||||||||||| Sbjct 771765 CTTTTGCTCCACGCGAGGTTTCTGTCCACGCTGAGCTGGCCTTAGGACACCTGCGTTATT 771706 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| ||||||||||||||| || |||| || | |||||| Sbjct 771705 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAGTGTCTTCGAATCGGATC 771646 >seq1111 Length=160291 Score = 414 bits (458), Expect = 3e-113 Identities = 318/381 (83%), Gaps = 21/381 (6%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA-- 231 |||||||||| || ||||||| |||| || | ||||||||||||||||| || ||| Sbjct 8694 TCCGCTTCATCGAATAAGTAAGGAAACAATGAAAGTAGTGGTATTTCACTTTCGGCGACC 8635 Query 232 ---------------AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 | || ||||||||||| |||||||||||| ||| | ||| | Sbjct 8634 GGACCCGAAGACCCGACCGCCTCCCACTTATGCTACACCTCTCACGTCTCCTTACAGTGC 8575 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 8574 CAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCC 8515 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT----GGGAATCTCGTTAATCCA 392 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8514 CTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGAACGCGGGAATCTCGTTAATCCA 8455 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8454 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 8395 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||| | |||| | |||||||||| || |||||| |||||||| Sbjct 8394 CTCCCGCCGTTTAAATGAGCTTTTTCGAATTTCTTCGTCTTCACATTCGATTCACTGGGC 8335 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| Sbjct 8334 AGAAATCACATTGCGTCAACA 8314 Score = 113 bits (124), Expect = 1e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| ||||||| | | |||| |||||||||||||||||||| Sbjct 8960 CTTTTGCTCCACGCGAGGTTTCTGTCCACGCTGAGCTGGCCTTAGGACACCTGCGTTATT 8901 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| ||||||||||||||| || |||| || | |||||| Sbjct 8900 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAGTGTCTTCGAATCGGATC 8841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635169225536