Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq27989 311 3e-82 seq7139 158 4e-36 seq10312 78.8 3e-12 >seq27989 Length=4809 Score = 311 bits (344), Expect = 3e-82 Identities = 352/466 (76%), Gaps = 43/466 (9%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA---GAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | ||| ||||||| ||||| | ||||||| Sbjct 3677 GTACTCATTCCAATTACAGGGCCTCGGATGTGAGTCCTGTATTGTTATTTTTCGTCACTA 3736 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 3737 CCTCCCCGTGCCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 3796 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 3797 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 3856 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || |||| |||||||| | ||||||||||||||| |||||||||| | |||| || Sbjct 3857 GTAGTCCTCTATACTACCATCAATAGTTGATAGGGCAGACATTTGAATGATCTATCGTCG 3916 Query 238 GCTC-AAGGCCATGCGAT------TCGTTA-----AGT---TATTATGAATCACCAAG-- 280 | | ||| |||| |||| | ||| ||| | | || || || | || Sbjct 3917 GTGCAAAGACCATACGATCAGCCATAATTATCCAGAGTTCATCTAATAAACCATCTAGCT 3976 Query 281 -GAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC--------CCCTTCCGAAG 331 ||| ||| | | |||||||| ||||||||| ||| || |||||| Sbjct 3977 CGAGAGCCG--GATCATTGGTTTTAAGTCTAATAAAAGCACATGTCTCAACCCCCCGAAG 4034 Query 332 -------TCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA- 382 || |||| || ||||||||||||||| |||||||||| |||||||| ||| Sbjct 4035 GAAGTGATCCATGTTTGTTTGCATGTATTAGCTCTGGAATTACCACAGTTATCCAAGTAA 4094 Query 383 --GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 || || |||||||||| ||| ||| | || |||||| || Sbjct 4095 CTGT-TTTTATGATCAAATAAATAATAGCTGTTGTACTGAGCCTTT 4139 Score = 98.7 bits (108), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 |||||||| || | || | || |||||||||||||||||||||||||||||||||||||| Sbjct 4236 GTTTCACTATA-ATATAGTTTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 4178 Query 491 ATGACTACTGGCAG 504 || ||||||||||| Sbjct 4177 ATAACTACTGGCAG 4164 >seq7139 Length=1682 Score = 158 bits (174), Expect = 4e-36 Identities = 139/170 (82%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTAT 394 || || ||||||||||||||| |||||||||| |||||||| ||| || || || Sbjct 462 TTGTTTGCATGTATTAGCTCTGGAATTACCACAGTTATCCAAGTAACTGTTTT-TATGAT 404 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||||||| ||| ||| | || |||||| || | |||||||| || | || | || || Sbjct 403 CAAATAAATAATAGCTGTTGTACTGAGCCTTTTACGGTTTCACTATA-ATATAGTTTGTA 345 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 344 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 295 >seq10312 Length=894 Score = 78.8 bits (86), Expect = 3e-12 Identities = 77/98 (79%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 || ||| | || |||||| || || |||||||| || | || | || || || || |||| Sbjct 36 TAGCTGCTGTACTGAGCCTTTTGCGGTTTCACTATA-ATATAGTTTGTATTTGGATATGC 94 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||| ||| ||||||| || Sbjct 95 ATAGCTTAATCTTTGAGACAAGTGTATAACTACTGACA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508786500096