Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_024909.1 Length=2232 Score E Sequences producing significant alignments: (Bits) Value seq17537 159 5e-36 seq11936 109 8e-21 >seq17537 Length=382 Score = 159 bits (176), Expect = 5e-36 Identities = 237/339 (70%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 1072 ACATTGATTATGTAACAGTTGTTTATCAACCAATCGTAGTCCACCCCTTTAGCGAAGTGC 1131 |||||||| |||| ||| || | ||||| ||||| || || || || || | Sbjct 47 ACATTGATGATGTCACAATTTCCCAGTAACCACTCGTAATCTGCC---TTTGCACAGCCC 103 Query 1132 ---GGGTCCTCATTCATGCACATGATCGAGGGCTTGCCCCAATAGATTGTGCGCTTCTTT 1188 ||||| |||||||| ||||||| | || || ||||| || ||| |||||| Sbjct 104 CCTGGGTCATCATTCATCAACATGATGCATGGTTTACCCCACCGGACTGTTTTCTTCTTC 163 Query 1189 CGGTATTTGTCGGTTATGACAAATTGCTTCTGCGCACCTAGCCACCCCTTGTAGGAGTGG 1248 ||||||||| |||| |||||||| ||| || |||||||||||||||||||| |||||| Sbjct 164 TTGTATTTGTCAGTTACGACAAATTCCTTTTGTGCACCTAGCCACCCCTTGTATGAGTGG 223 Query 1249 AAATACTCAAATCCTCCCTGGATGTCGTCGAAGACGGNNNNNNNNNNNNNNNNTGAGTAT 1308 || | || ||||||||||| | ||||||||| || | | | Sbjct 224 AAGAATTCGAATCCTCCCTGAAGGTCGTCGAATACTGCGTAGTCCGTGGACTCACTGAAG 283 Query 1309 TCGTCCATGTTGAATTGTAGATTGAAGTACGCGTGTTTTCCGAGGGACCGGGCGTAGAGG 1368 ||| | ||||||||||| |||||||| | |||| |||| || |||||| | || Sbjct 284 GAGTCGAGGTTGAATTGTAAGTTGAAGTAAGAGTGTCTTCCCAGACTACGGGCGAAAAGA 343 Query 1369 GTCTTTCCCGTTCGGGTAGG-TCCCCATAGAATGAGTGA 1406 |||||||| || | || || |||||||||||||| || Sbjct 344 GTCTTTCCTGTCCTTGTGGGACCCCCATAGAATGAGCGA 382 >seq11936 Length=696 Score = 109 bits (120), Expect = 8e-21 Identities = 290/431 (67%), Gaps = 14/431 (3%) Strand=Plus/Minus Query 1717 CAACCAATCTCTTGGAGCCTGCTCACGTACCGCTGACAAAAATGATTCTTTGTCGTTGCA 1776 || |||||| | ||||| || || |||||||||| ||| ||||| || || ||| Sbjct 633 CACCCAATCGCA-GGAGCTTGTGAGCGCACCGCTGACAGAAAAGATTCCTTAGAGTCGCA 575 Query 1777 GCTGATGATATCATGCCACTTATTTGAATCATTCCCGTCACGTGAGCGAGCCTCTGCT-G 1835 || || |||||| ||||| | ||||| |||| | | | | ||| | | Sbjct 574 GCCGACGATATCGTGCCATCTCGCTGAAT--TTCCTCCCCCAGCATTATTCGTCTCATCG 517 Query 1836 GTGGCTCC-CCGTGCTCAAGTCGGATGTCTCCATCCTTGCCGACATAATCGAAGACCTTG 1894 | |||| || | ||| | | ||||| ||| ||||| |||||||| || | ||||| Sbjct 516 GGGGCTGTACCATACTCGAATACGATGTGTCCGTCCTTCCCGACATACTCATATACCTTT 457 Query 1895 TTTGGAGTTCGACGTACCGATTTAATATTTCCGTGAGCTCCAAAGTAATCGAACGCAGTA 1954 || || || | |||||||||||||||||||| ||| ||||||||||| || || Sbjct 456 CGAGGCGTAACTCGAATCGATTTAATATTTCCGTGAGATCCGAAGTAATCGAAAGC-GTC 398 Query 1955 GCCGAGTTGATAGA--GACAATCTTGTCGAAGCCAAGATAAACGTGGTAATGGATTCCTC 2012 | | | ||| | | |||| | || |||| ||| || || |||||||| || |||| Sbjct 397 G-GGTGCTGAGACAACGACAGGCGACTCAAAGCTAAGGTATACATGGTAATGAATGCCTC 339 Query 2013 CATCCGCATGGCGCTCTCGTCCGAGTCGACAGCATAGAGGATTGCCATAATCCGCTGTGA 2072 |||| || ||||| ||| | ||| ||| |||||| || ||||| | | Sbjct 338 CATCGCTGTGAGACTCTCTTCCAATTCGGAGGCACGTAGGATTCTCAAAATCCCGTTGCA 279 Query 2073 CACGTTCAAGGAAAGGAGTTCCA---GCGTCGAATCGTG-GTTGGACATCTTCGGAGACT 2128 || |||||||||| |||| | ||||| | || | ||||||||||||| | | Sbjct 278 CAAATTCAAGGAAATCTCCTCCATGGTCATCGAA-CTTGCGCTGGACATCTTCGGTGGTT 220 Query 2129 TGGGGAAATGT 2139 || || ||||| Sbjct 219 TGTGGGAATGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7025616679368