Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_026144.1 Length=2115 Score E Sequences producing significant alignments: (Bits) Value seq17537 140 4e-30 seq11936 102 1e-18 >seq17537 Length=382 Score = 140 bits (154), Expect = 4e-30 Identities = 220/311 (71%), Gaps = 18/311 (6%) Strand=Plus/Plus Query 1009 ATGATGACACAATTTAACTGTAACCACTCGTAGTCTACTCCCTTTAGAAAATT---TGGA 1065 |||||| |||||||| | ||||||||||||| ||| | |||| | | ||| Sbjct 53 ATGATGTCACAATTTCCCAGTAACCACTCGTAATCTGC---CTTTGCACAGCCCCCTGGG 109 Query 1066 TTTTCGTTCAAGCACATGATCGTAGGCTTTCCCCACTTTATCGTCCGCTTCTTCCGATAC 1125 | || |||| ||||||| || || |||||| | || ||||||| || Sbjct 110 TCATCATTCATCAACATGATGCATGGTTTACCCCACCGGACTGTTTTCTTCTTCTTGTAT 169 Query 1126 TTATCGGTGATGACAAATTCCTTCTGGGCGCCTAACCATCCCTTGTATGAGTGCCAGAAC 1185 || || || | |||||||||||| || || |||| ||| |||||||||||||| |||| Sbjct 170 TTGTCAGTTACGACAAATTCCTTTTGTGCACCTAGCCACCCCTTGTATGAGTGGAAGAAT 229 Query 1186 TCGAATCCTCCCTGGATGTCGTCGAAGACGGCGTA----TTTGACTCCGTCGCTGAATCC 1241 |||||||||||||| | ||||||||| || ||||| | ||| || ||||| Sbjct 230 TCGAATCCTCCCTGAAGGTCGTCGAATACTGCGTAGTCCGTGGAC----TCACTGAAGGA 285 Query 1242 GTCCATATTGAATTGGAGGTTGAAGTATGCATGTTCTCCCAATGAC--CGGGCGAAGAGG 1299 ||| | |||||||| | ||||||||| | ||| ||||| ||| |||||||| || Sbjct 286 GTCGAGGTTGAATTGTAAGTTGAAGTAAGAGTGTCTTCCCA--GACTACGGGCGAAAAGA 343 Query 1300 GTCTTCCCCGT 1310 ||||| || || Sbjct 344 GTCTTTCCTGT 354 >seq11936 Length=696 Score = 102 bits (112), Expect = 1e-18 Identities = 196/281 (70%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 1798 TCGTACCGATTTAATATTTCCGTGAGCTCCGAAGTAATCGAACAGGTTTGCGCGGT-TGA 1856 ||| | |||||||||||||||||||| ||||||||||||||| || | | | | | || Sbjct 445 TCGAATCGATTTAATATTTCCGTGAGATCCGAAGTAATCGAA-AGCGTCGGGTGCTGAGA 387 Query 1857 TATGGACAACCTCATCGAAGCCAATGTACATATGGTAATGAACTCCTCCATCCTGGTGAC 1916 | |||| | || |||| || ||| | ||||||||||| |||||||| |||| Sbjct 386 CAACGACAGGCGACTCAAAGCTAAGGTATACATGGTAATGAATGCCTCCATCGCTGTGAG 327 Query 1917 GTTCTCTTCCCAGCCGGAAGCATGAAGGATCTTTGAGATC---TTGAGTGATATTGAGCA 1973 |||||||| | |||| ||| | ||||| | | ||| ||| | ||| | | Sbjct 326 ACTCTCTTCCAATTCGGAGGCACGTAGGATTCTCAAAATCCCGTTG-CACAAATTCA--A 270 Query 1974 GCAAACTTGCCCCCTCGTGATCGAA-TCGCTGTTGGACATCTTCACTAACTTGTGGAAAA 2032 | ||| | | || | || |||||| | || | ||||||||||| | |||||| || Sbjct 269 GGAAATCTCCTCCATGGTCATCGAACTTGC-GCTGGACATCTTCGGTGGTTTGTGGGAAT 211 Query 2033 GTGACTATGAAGGCTTTTGCTCGGGCCTGAAATCGTGGCAT 2073 || | || |||||||| || || || |||||| || ||| Sbjct 210 GTAAGAATAAAGGCTTTGGCACGAGCACGAAATCTTGCCAT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6651641633196