Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq47705 239 1e-60 seq192360 170 5e-40 seq171562 104 6e-20 >seq47705 Length=4283 Score = 239 bits (264), Expect = 1e-60 Identities = 297/395 (75%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| | |||| |||||||||| | || ||||||||| ||| |||||||| | Sbjct 3228 TTTTCAACGCTTACCGGTGCGGTCCTCCAAGTGGT-GTTACCCAATCTT-CAACCTGCTC 3171 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGA 148 | ||| |||||| | ||||| || ||||| | |||| ||||| | |||||| ||||| Sbjct 3170 A-AGGGTAGATCACTTGGTTT-CGCGTCTACT-CCCATTGACTAAAGCGCCCTGTTAAGA 3114 Query 149 CTCGCTTTTCGCTACGCCTCC---CCTATTCGGT-TAAGCTTTGCCACTGAAAATAAGTC 204 || ||||| |||| || ||| | |||| | | | | |||||| ||| | ||| || Sbjct 3113 CTTGCTTT-CGCTTCGGATCCATACTTATTAGTAATTATCCTTGCCAATGAGAGTAACTC 3055 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264 | | |||||| ||||||| |||| ||||| | | | |||| || ||||||| Sbjct 3054 GTAGGTTCATTATGCAAAAGGCACGCCGTCACATTATTATG----CTCCGACCGCTTGTA 2999 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 324 ||| | ||||||||| ||||||||||||| || | | |||||||||| |||||||||| Sbjct 2998 GGCACATGGTTTCAGGGTCTATTTCACTCCTCTATTTGAGGTTCTTTTCACCTTTCCCTC 2939 Query 325 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 384 |||||||| |||||||||||||| || ||||||||||||| ||||||||||| Sbjct 2938 ACGGTACTGGTTCACTATCGGTCTCTCGTGAGTATTTAGCCTTACGGGATGGTCCCCGTC 2879 Query 385 TATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||| ||| ||||||||| ||| |||||| Sbjct 2878 GATTCATACAGGATTTCTCGTGTCCCGCACTACTC 2844 >seq192360 Length=5402 Score = 170 bits (188), Expect = 5e-40 Identities = 172/221 (78%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTGGGCTCCCACT 257 ||| |||| | | |||| | ||||||| |||| ||||||| || ||| |||||| || Sbjct 3105 TAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACCCCTACTAAGGAGGCTCCAACG 3046 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 | ||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||| ||| Sbjct 3045 GTTTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCACCT 2987 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| || | |||||||||| | ||||||||| ||| | |||| Sbjct 2986 TTCCCTCACGGTACTTGTCCGCTATCGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGT 2927 Query 378 CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 || || ||||| || ||||||| || |||| ||||| Sbjct 2926 CCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 2886 Score = 125 bits (138), Expect = 2e-26 Identities = 136/170 (80%), Gaps = 9/170 (5%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 |||||||||||| |||| | | | || || |||| | || ||||||| ||||| || | Sbjct 3411 TCCGATCCACAGCTCAT--CCCCATCTATTGCAACAGATGTGGGTTCGGCCCTCCGGTCA 3354 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || |||||| || |||||| |||| |||| ||||||||||| || ||||||||||| | Sbjct 3353 GT-GTTACCTAA-CTTTCAGCCTGGCCAT-GGATAGATCGCTTGG-TTTCGGGTCTA-TA 3299 Query 123 CCCAGCGACTAGACGCCCTA-GTAAGACTCGCTTTTCGCTACGCCTCCCC 171 ||| |||||| ||||||||| ||||||||| |||| ||| |||||||| Sbjct 3298 CCCTGCGACTTGACGCCCTATTTAAGACTCG-GTTTCCCTATGCCTCCCC 3250 >seq171562 Length=979 Score = 104 bits (114), Expect = 6e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC 393 |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 3 GTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC 62 Query 394 AAAGTTTCTCGTGCTCCGTCCTACT 418 | ||||||||| ||| |||||| Sbjct 63 AGGATTTCTCGTGTCCCGCCCTACT 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239210416640