Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq192360 304 2e-80 seq58108 266 5e-69 >seq192360 Length=5402 Score = 304 bits (336), Expect = 2e-80 Identities = 228/268 (85%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| ||||||||| |||||| ||||||| ||| |||||||| ||| || |||| Sbjct 5397 GGCTTCGTACTTAGATGCTTTCAGCACTTATCCAATCCGCACTTAGCTACCCGGCAATGC 5338 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| ||||| ||| ||||| ||| ||||| | |||||||||||||||| Sbjct 5337 TCCTGGCGAAACAACCGGTAAACCAGCGGTGCGTCCAACACGGTCCTCTCGTACTAGTAT 5278 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| ||||| ||||| |||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct 5277 CAGATCCTCGCAAATATCCTGCGCCCACGATAGATAGAGACCGAACTGTCTCACGACGTT 5218 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | Sbjct 5217 CTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCC 5158 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 5157 AGCCCCAGGATGTGACGAGCCGACATCG 5130 >seq58108 Length=1450 Score = 266 bits (294), Expect = 5e-69 Identities = 222/272 (82%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || ||||||| |||||||||| |||||| ||||||| ||| | |||||| || || Sbjct 963 GGTGGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTATTTAGCTACCGGGCA 904 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 |||| |||||| ||||| | |||||| | | ||||| ||||||||||||||||| Sbjct 903 ATGCCATTGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTA 844 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 | ||||||| |||| ||||| ||||||||| | |||||||||||||||||||| ||| Sbjct 843 GGAGCAGCTCCCTTCAATTTTCCAACGCCCACGGCAGATAGGGACCGAACTGTCTCACGA 784 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 ||||||||||||| ||||||| || |||||| ||||||||||| |||||||||||| | Sbjct 783 CGTTCTGAACCCAACTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGA 724 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || ||| |||||||| Sbjct 723 CTACAGCCCCAGGATGTGATGAGTCGACATCG 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779344232560