Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq192360 369 9e-100 seq47705 311 2e-82 >seq192360 Length=5402 Score = 369 bits (408), Expect = 9e-100 Identities = 328/408 (80%), Gaps = 3/408 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 979 TACCTGAAGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 1038 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||| || Sbjct 1039 AAGCGTTAATCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGTTTCTTAAGTTAGATGT 1098 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||||| | ||||||||| || | ||| ||| | |||| |||||||| | || Sbjct 1099 GAAAGCCCCGGGCTCAACCTGGGAATTGCATTTAATACTGGGTAACTAGAGTGTGGTAGA 1158 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 | || |||||| || ||||||||||||||||||||||||| || |||||||||| ||| Sbjct 1159 GAGTAGCGGAATTTCTGGTGTAGCGGTGAAATGCGTAGATATCAGAAGGAACACCAATGG 1218 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||| ||| |||| | |||||| ||||||| ||||||| |||||||||||||| Sbjct 1219 CGAAGGCAGCTACCTGGGCCAACACTGACGCTGAGGCGCGAAAGCATGGGGAGCAAACAG 1278 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 |||||||||||||||||||||| || |||||||||| ||| | || |||| || ||| Sbjct 1279 GATTAGATACCCTGGTAGTCCATGCTATAAACGATGACAACTTGTTGATGGGGGGC-TAA 1337 Query 361 GTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || || || || ||| |||| ||||| ||| ||||||||||| Sbjct 1338 --CCTTCGTTGACGTAGCTAACGTGTTAAGTTGTCCGCCTGGGGAGTA 1383 >seq47705 Length=4283 Score = 311 bits (344), Expect = 2e-82 Identities = 307/396 (78%), Gaps = 3/396 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| Sbjct 970 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCG 1029 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| ||||||||||||||| || | ||||||||| |||||||| | || Sbjct 1030 GATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATATTAAGTCAGCGGTGAAAGTTTGAGG 1089 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| | ||| ||||||||| || |||| || | | | | ||||| Sbjct 1090 CTCAACCTTAAAATTGCCGTTGAAACTGGTATTCTTGAGTATAGATGAAGTAGGCGGAAT 1149 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 || | ||||||||||||||||| ||||||| | || |||| ||| | ||| |||| |||| Sbjct 1150 TCGTGGTGTAGCGGTGAAATGCATAGATATCACGAAGAACTCCAATTGCGCAGGCAGCTT 1209 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || | |||||||| ||||||| |||||||||||| | ||||||||||||||||||| Sbjct 1210 ACTAAGGTATAACTGACGCTGAGGCACGAAAGCGTGGGTATCAAACAGGATTAGATACCC 1269 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||| |||| |||||| ||| | | ||| ||| Sbjct 1270 TGGTAGTCCACGCCGTAAACTATGATTACTAGCTGTTTGTG---ATATTACAATAAGTGG 1326 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || || ||||||| ||||||||||||||| Sbjct 1327 CTAAGCGAAAGCGATAAGTAATCCACCTGGGGAGTA 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200884321280