Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq3034 309 6e-82 seq9000 163 6e-38 >seq3034 Length=3327 Score = 309 bits (342), Expect = 6e-82 Identities = 263/320 (82%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 18 TGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACGG 77 ||||||||| |||||| || ||| |||||||||||||||| | | ||| ||||||| Sbjct 3270 TGAAATAGATCCTGAAACCATACGCTTACAAGCGGTCGGAGCACATTTATTGTGTGACGG 3211 Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAG 137 ||||||||||||||||||||||||||||||| | |||| |||||||||||| ||||| Sbjct 3210 CGTGCCTTTTGCATAATGAGCCTACGAGTTAATT-TCACTAGCGAGGTTAAGTAGTTCAG 3152 Query 138 GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGCTAGACG 196 ||| ||||| || ||||||||| || || |||||| |||| |||| |||||| Sbjct 3151 CTACGT-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGCTATAGTTAGTGGGATTAGACG 3093 Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACC 256 ||||||||||||||||| ||| | ||||||||||| |||||| | ||||||||| Sbjct 3092 CGAAACCTTGTGATCTATCCATGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACC 3033 Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316 |||||||| |||||||||||| |||||||||| | || |||||||||||||| ||||| Sbjct 3032 GAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGTTAGGGGTGAAAGGCTAATCA 2973 Query 317 AACTGGGAAATAGCTCGTAC 336 |||||||| ||||||||||| Sbjct 2972 AACTGGGAGATAGCTCGTAC 2953 >seq9000 Length=5484 Score = 163 bits (180), Expect = 6e-38 Identities = 234/326 (72%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA-GTGATTC 69 ||||| |||||||||| |||||| |||| || ||||| ||||||||| || | Sbjct 3574 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTCGGAGCCTTCGTAAGGG 3633 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||||||||| ||||||| |||||| | | ||| ||| | | |||||||||| Sbjct 3634 GGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACATTT-AGTGGCGAGGTTAAC 3692 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGC 188 | | || ||||| || |||| |||| | || ||||||| ||| | | | Sbjct 3693 CGAATAGGGG-----AGCCGCAGAGAAATCGAGTCCGAATAGGGCGAATTAGTCGCTAGG 3747 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||| ||| | |||||||||| || ||||| || | Sbjct 3748 TGTAGACCCGAAACCGAGTGATCTATCCATGGCCAGGTTGAAGGTGCCGTAACAGGTACT 3807 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 |||||||||||||| | |||| ||| | ||||||| | || |||||||||||| Sbjct 3808 GGAGGACCGAACCGACTGATGTTGCAAAATCAGCGGATGAGCTGTGGATAGGGGTGAAAG 3867 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || || |||||| |||||||||| || Sbjct 3868 GCTAAACAAACTCGGAAATAGCTGGT 3893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972610566656