Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq9000 132 7e-29 seq3034 98.7 1e-18 >seq9000 Length=5484 Score = 132 bits (146), Expect = 7e-29 Identities = 179/248 (72%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||| ||| || ||||| || |||| ||| || ||| | || Sbjct 4923 CTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCT 4865 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||| | ||| ||| | | || ||| Sbjct 4864 GTGTTTTTAATAAACAGTCGCAGCCACCAATTTTTTGCAACCCCTTCGTGC----ATCGT 4809 Query 127 CGTTCAC------CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 |||||| | || ||||| ||||||||| ||||||||| | || |||||||| Sbjct 4808 TGTTCACTACTCACTACAAGGGCACACCTTCTCCCTAAGTTACGGTGTCAATTTGCCGAG 4749 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| ||| ||||| | | | |||||||| || ||| | | |||| |||||||| Sbjct 4748 TTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGT 4689 Query 241 TTACGGTA 248 || ||||| Sbjct 4688 TTGCGGTA 4681 >seq3034 Length=3327 Score = 98.7 bits (108), Expect = 1e-18 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 || ||||||||||||||| || | |||||||| | ||||||||||| ||||| ||| | Sbjct 1995 CCTTTCTCCCGAAGTTACAGGTCTATTTTGCCTAGTTCCTTAACCATGATTCACTCGAGC 2054 Query 206 GCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGGTTT 242 ||||||| || |||| ||| | |||||||||||||||| Sbjct 2055 GCCTTAGGATACTCT-CCTCATCCACCTGTGTCGGTTT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694269005129