Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq3034 147 2e-33 seq9000 73.4 4e-11 >seq3034 Length=3327 Score = 147 bits (162), Expect = 2e-33 Identities = 140/174 (80%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | | || ||| |||||||||| |||||||||| |||||||| Sbjct 2091 AAACCGACACAGGTGGATGAGGAGAGTATCCTAAGGCGCTCGAGTGAATCATGGTTAAGG 2032 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAG--AAATGGGAG 142 ||||||||||| | ||||||||||||||| ||| |||| || ||| | ||| |||| Sbjct 2031 AACTAGGCAAAATAGACCTGTAACTTCGGGAGAAA-GGTCGCT-CCCTGTAAAAAGGGA- 1975 Query 143 GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 1974 GCCGCAGTGAAAAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCAAA 1921 >seq9000 Length=5484 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| || | Sbjct 4684 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCTGGAGA 4743 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC 126 ||||||| |||||| |||| | ||||||| |||| || | || || Sbjct 4744 AGGAACTCGGCAAATTGACACCGTAACTTAGGGAGAAGGTGTGCC 4788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531099791942