Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq9000 414 2e-113 seq3034 179 9e-43 >seq9000 Length=5484 Score = 414 bits (458), Expect = 2e-113 Identities = 344/417 (82%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 5113 CGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 5054 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5053 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4994 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| |||||||||| Sbjct 4993 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCT-------- 4942 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || ||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| Sbjct 4941 -CTCACCCCATCATTTAATCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT 4883 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||| || | | | | ||| Sbjct 4882 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCAATTTTTTGCAACC 4823 Query 301 GGCATGAGCTTACGGAGCAAGTC-CTTCACCCT-CACCGGCGCACCTTCTCCCGAAGTTA 358 | || | || | || || | | || || ||| ||||||||||| |||||| Sbjct 4822 CCTTCGTGCAT-CGTTG---TTCACTACTCACTACAAGGGCACACCTTCTCCCTAAGTTA 4767 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||||| | |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 4766 CGGTGTCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 4710 >seq3034 Length=3327 Score = 179 bits (198), Expect = 9e-43 Identities = 135/156 (87%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| | | | ||||||||| ||| ||| ||| ||||||| Sbjct 1627 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCATGGTTGAGACAGT 1685 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1686 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1745 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGG 156 ||||||||||||| |||||||||||||||||| ||| Sbjct 1746 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 1781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260554484416