Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq9000 233 4e-59 seq3034 214 4e-53 >seq9000 Length=5484 Score = 233 bits (258), Expect = 4e-59 Identities = 278/381 (73%), Gaps = 32/381 (8%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | | ||||||||| |||||| Sbjct 5101 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 5042 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5041 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4982 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | || | ||||| || | Sbjct 4981 TAGTTACGGCCGCCGTTTACTGGGACTTCA---------ATCAAGAGCTCTCACCCCATC 4931 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||| ||| ||||||| || ||| || || |||| Sbjct 4930 ATTTAATCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGTTTGCAG 4871 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG---- 296 | |||||||||| ||||||||||| || ||| | ||| || || Sbjct 4870 AGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCAATTTTTTGCAACCCCTTCGTGCATC 4811 Query 297 -----TCA--------TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 ||| || | ||||| ||||||||||||||||||| |||| ||||||| Sbjct 4810 GTTGTTCACTACTCACTACAAGGGCACACCTTCTCCCTAAGTTACGGTGTCAATTTGCCG 4751 Query 344 AGTTCCTTAACAATAGTTCTC 364 |||||||| | | ||||||| Sbjct 4750 AGTTCCTTCTCCAGAGTTCTC 4730 >seq3034 Length=3327 Score = 214 bits (236), Expect = 4e-53 Identities = 135/146 (92%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| || |||||||||||||||| |||| Sbjct 1636 CGGCATCTTCACCGATACTACAATTTCACCGAGCTCATGGTTGAGACAGTGCCCAGATCG 1695 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1755 Query 125 TATAGTTACGGCCGCCGTTTACTGGG 150 |||||||||||||||||||||||||| Sbjct 1756 TATAGTTACGGCCGCCGTTTACTGGG 1781 Score = 109 bits (120), Expect = 1e-21 Identities = 109/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 ||||||| || |||| ||| || ||||| |||||||||||| ||||||||||| ||||| Sbjct 1901 CCTATACTTCATCTTTCGATTTTGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGC 1960 Query 280 CTATTCTCTGCGGCCTGTCATAGACAG---GCACCCCTTCTCCCTAAGTTACGGGGTCAT 336 || ||| ||||||| | |||| || || ||||||| ||||||| || || Sbjct 1961 CTTTTCACTGCGGCTCCCTTTTTACAGGGAGCGACCTTTCTCCCGAAGTTACAGGTCTAT 2020 Query 337 TTTGCCGAGTTCCTTAACAAT 357 |||||| ||||||||||| || Sbjct 2021 TTTGCCTAGTTCCTTAACCAT 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062193118848