Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3034 183 6e-44 seq9000 150 4e-34 seq13862 77.0 6e-12 >seq3034 Length=3327 Score = 183 bits (202), Expect = 6e-44 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| ||||| || ||| Sbjct 1448 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTATCCT 1389 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| | ||| |||| |||| | |||| || |||| ||||||| ||||||| || ||| Sbjct 1388 CAGCACGCTTGGTAACCGTGCGTAGAGTGTAATGGCATAAGGGTGCTTGACTGTGAGACC 1329 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| |||||| || | || |||||||| ||| | | |||||| ||| Sbjct 1328 AACAAGTCGATCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTTCCGCATGGAAGGGC 1269 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||| ||| | ||||||| Sbjct 1268 CATCGCTCATAGGATAAAAGGTACTCCGGGGATA 1235 >seq9000 Length=5484 Score = 150 bits (166), Expect = 4e-34 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | |||||||||||||||||||||| ||||| |||| |||||||||| Sbjct 5288 GGGACAGTGCATGGTGGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGCGTAACGGAGGA 5347 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || | ||| ||| || || || ||| | | ||| | |||||| ||||| ||| ||| Sbjct 5348 GCTCGAAGGTACGCTAGGCACGGTCGGACATCGTGCTAATAGTGCATAGGCATAAGCGTG 5407 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||||| || |||||| |||||| | |||| | || || | |||||||| ||| Sbjct 5408 CTTGACTGCGAGACTGACAAGTCGAGCAGGTAGGAAACTAGGACTAAGTGATCCGGTGGT 5467 Query 291 GCTGAATGGAACGGCC 306 ||| |||||| |||| Sbjct 5468 TCTGTATGGAAGGGCC 5483 >seq13862 Length=1128 Score = 77.0 bits (84), Expect = 6e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAG 178 ||||||||||||||||||||| ||||||||||||||||||||| || | ||| Sbjct 179 GGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982208697248