Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq9000 304 3e-80 seq6538 163 6e-38 >seq9000 Length=5484 Score = 304 bits (336), Expect = 3e-80 Identities = 270/335 (81%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | |||||||||||| |||||||||| || | |||| Sbjct 981 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCATTG-CTGGATCAGGGTTGCCCCCA 924 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 923 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 864 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| ||||| | |||||| |||| |||||| || Sbjct 863 GTGGCTGATCATCCTCTCAGACCAGCTACAGATCGCAGGCTTGGTAAGCCTTTACCTTAC 804 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| | | | ||| || || ||||||||||| ||||||||||||||| Sbjct 803 CAACTACCTAATCTGCCATCGGCCACTCCAATTGCGCAAGGCCCAAAGGTCCCCTGCTTT 744 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||||| ||||||||||||| |||| ||| |||||||| | || Sbjct 743 CATCCGTAGATATCATGCGGTATTAGCTAATCTTTCGATTAGTTGTCCCCCACAATTGGG 684 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | | |||||||||||| |||| ||| Sbjct 683 CATGTTCCGATGTGTTACTCACCCGTTCGCCACTC 649 >seq6538 Length=3451 Score = 163 bits (180), Expect = 6e-38 Identities = 138/170 (81%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || |||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct 1508 CACGCGGGAT-GGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTC 1450 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| ||||||||||||||||||||| ||||| |||||||| || | Sbjct 1449 CCGTAN---------CCGTGTCTCAGTTCCAGTGTGGGGGATCACCCTCTCAGGCCCCCT 1399 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | ||||| | | |||||| |||| |||||| |||||||| ||||||| || Sbjct 1398 AAGGATCATTGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATCCTAC 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071791249440