Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq9000 351 4e-94 seq3034 293 8e-77 >seq9000 Length=5484 Score = 351 bits (388), Expect = 4e-94 Identities = 411/547 (75%), Gaps = 20/547 (4%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGG-TTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCT 113 |||||||||||| ||| ||| |||||| | | |||||||| | | ||||||||| Sbjct 4001 ATTCGGAGTTTGCCTTGGTTT-GGTAAGTCGCCATGACCCCCTAGCCAAAACAGTGCTCT 3943 Query 114 ACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATC 173 ||| ||| | | || || || || |||||||| |||||| ||||||||||||| Sbjct 3942 ACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCTATT 3884 Query 174 ACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAA 233 | |||||| || ||||||||||||||||||||| |||||| || | ||| |||| | | Sbjct 3883 TCCGAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCTGATTTTGCAACATCA 3824 Query 234 GTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293 || |||||||||||||| | |||| |||||||||| |||||||||||||||| Sbjct 3823 GTCGGTTCGGTCCTCCAGTACCTGTTACGGCACCTTCAACCTGGCCATGGATAGATCACT 3764 Query 294 TCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC 353 | ||||||||| | | || ||| || ||||||||||||||||| |||| || |||| Sbjct 3763 CGGTTTCGGGTCTACACCTAGCGACTAATTCGCCCTATTCGGACTCGATTTCTCTGCGGC 3704 Query 354 TACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 | ||| | | |||||||||||| || || | || |||| | | |||| | ||||||| Sbjct 3703 TCCCCTATTC-GGTTAACCTCGCCACTAAATG-TAAGTCGCTGACCCATTATACAAAAGG 3646 Query 414 CACGCCGTCACCTGGTACCTAA--AAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 ||||||||||| ||| | ||| |||||||| ||||| ||| || Sbjct 3645 TACGCCGTCACC----CCCTTACGAAG--------GCTCCGACTTTTTGTAAGCATGCGG 3598 Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||||| |||||||||||||| || ||||| |||||| |||||||||||||||||||| Sbjct 3597 TTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTTG 3538 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 | | ||||||||| | |||||||||| ||| || ||||||| ||| ||||| || Sbjct 3537 TTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAAACA 3478 Query 592 AAATTTC 598 ||||| Sbjct 3477 GGATTTC 3471 >seq3034 Length=3327 Score = 293 bits (324), Expect = 8e-77 Identities = 320/418 (77%), Gaps = 24/418 (6%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 |||||||||||||||||||||||||||| || ||||||| | ||||||||| ||||||| Sbjct 2926 ACGCTGCACCTAAATGCATTTCGGGGAGTACGAGCTATCTCCCAGTTTGATTAGCCTTTC 2985 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| ||||||||||||| | |||||||| | | ||||||||||||||| Sbjct 2986 ACCCCTAACCACAGGTCATCCGAAGACTTTTCAACGTCAACCGGTTCGGTCCTCCACTTT 3045 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTG 314 || ||||| ||||||||||||||||||||||||||| | |||| ||| | ||| Sbjct 3046 GTGTTACCAAAGCTTCAACCTGCCCATGGATAGATCACAAGGTTTCGCGTC-TAATC--- 3101 Query 315 CCACTCA-TA---CGCCCTATTCGGACTCGCTTTCGCTACGGCTAC---CCCACACGGGT 367 ||||| | || |||||||||| |||||||||||||| ||||||| | || | Sbjct 3102 CCACTAACTATAGCGCCCTATTCAGACTCGCTTTCGCTGCGGCTACGTAGCTGAACTACT 3161 Query 368 TAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTG 427 ||||||||| | || |||||| ||||||||| | |||||||||||||||||| Sbjct 3162 TAACCTCGCTAGTGAA-ATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCAC--- 3217 Query 428 GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTC 487 || ||| | |||||||| | ||||| || ||||||||||| ||||||| Sbjct 3218 --ACAATAAA------TGTGCTCCGACCGCTTGTAAGCGTATGGTTTCAGGATCTATTTC 3269 Query 488 A-CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTC 544 | || | | | |||||||||||||||||||||||||||| ||||||||||| Sbjct 3270 ATCTTTCTATTCGAAATGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTC 3327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817246058752