Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9000 396 7e-108 seq3034 212 2e-52 >seq9000 Length=5484 Score = 396 bits (438), Expect = 7e-108 Identities = 346/416 (83%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| ||||| | |||| |||| |||||||||||||||||||| Sbjct 3859 CCTATCCACAGCTCAT-CCGCTGA-TTTTGCAACATCAGTCGGTTCGGTCCTCCAGTACC 3802 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| ||||||| |||| ||||||||| | |||||| |||||||| | Sbjct 3801 T-GTTACGGCACCTT-CAACCTGGCCAT-GGATAGATCACTCGGTTT-CGGGTCTACA-C 3747 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 | |||||||| ||||||| | |||||| ||| | || || ||||||||||||||||| Sbjct 3746 CTAGCGACTAATTCGCCCTATTCGGACTCGATTT-CTCTGCGGCTCCCCTATTCGGTTAA 3688 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 || |||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 3687 CCTC-GCCACTAAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCCTT 3629 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | | |||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||| Sbjct 3628 ACGAAGGCTCCGACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCG 3570 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||| | | |||||||| Sbjct 3569 GGGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATGATGAGTATTTA 3510 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||| ||| ||||||||| ||| |||||| Sbjct 3509 GCCTTGGAGGATGGTCCCCCCATATTCAAACAGGATTTCTCGTGTCCCGCCCTACT 3454 >seq3034 Length=3327 Score = 212 bits (234), Expect = 2e-52 Identities = 261/343 (76%), Gaps = 13/343 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 2994 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 3050 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| |||||||||||| ||||||||| | ||||| || ||||| | |||| Sbjct 3051 ACCAAAGCTT-CAACCTGCCCAT-GGATAGATCACAAGGTTT-CGCGTCTAAT-CCCACT 3106 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC---CTATTCGGTTAAGC 184 |||| | ||||||| | ||||||||||| |||| || || | || | | | | Sbjct 3107 AACTATAGCGCCCTATTCAGACTCGCTTT-CGCTGCGGCTACGTAGCTGAACTACTTAAC 3165 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | || | ||||| ||| ||| | | |||||| ||||||| |||| ||||| ||| ||| Sbjct 3166 CTCGCTAGTGAAATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACACAATAAA 3225 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||| || ||||||| || || ||||||||||||||||||| || | || Sbjct 3226 -TGTGCTCCGACCGCTTGTAAGCGTATGGTTTCAGGATCTATTTCATCTTTCTATTCGAA 3284 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 | |||||| |||||||||||||||||| |||| ||||||||| Sbjct 3285 ATGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTC 3327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241358223232