Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq9000 192 1e-46 seq6538 147 4e-33 >seq9000 Length=5484 Score = 192 bits (212), Expect = 1e-46 Identities = 141/164 (86%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| ||| || ||||||||||||||||||||| Sbjct 950 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 891 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 890 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGAT 831 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 || |||||||| || ||| || ||||||||||||||| ||| Sbjct 830 CGCAGGCTTGGTAAGCCTTTACCTTACCAACTACCTAATCTGCC 787 >seq6538 Length=3451 Score = 147 bits (162), Expect = 4e-33 Identities = 214/299 (72%), Gaps = 18/299 (6%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| | || |||||||| |||||| || ||||||||||||||||| Sbjct 1497 GCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAN------ 1444 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||| ||| ||||| | ||| |||||||| || ||| |||| | | Sbjct 1443 ---CCGTGTCTCAGTTCCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAGGATCATTGT 1387 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| || ||| || |||||||| |||||| ||| ||| |||| | |||| Sbjct 1386 CTTGGTAAGCCGTTACCTTACCAACTAACTAATCCTACGCATGCCTATCTCTATCTGATA 1327 Query 187 AATCTTTGGTCA-AAGAA-TGATGCCA--TCCTCTGACATTATGCGGTATTAGCGTTCGT 242 ||||||| | | ||||| |||||||| |||| | ||||| |||||||| || Sbjct 1326 AATCTTT--TAATAAGAATTGATGCCAATTCCT---ATATTATCCGGTATTAATCCGAGT 1272 Query 243 TTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 |||| | ||| || | ||||||| ||| | ||| ||||| ||||||| |||| Sbjct 1271 TTCCTCGGGCTATCCCCGTGATAAAGGCAAGTTACATACGCGTTACGCACCCGTGCGCC 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998205581568