Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq9000 172 1e-40 seq3034 134 3e-29 >seq9000 Length=5484 Score = 172 bits (190), Expect = 1e-40 Identities = 287/404 (71%), Gaps = 13/404 (3%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 4454 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 4395 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 4394 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 4336 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| ||||| || | ||| ||||| || | ||| | Sbjct 4335 ATTCGCACTTCTGAT-ACCTCCAGCACACT-TCTCAATGCACCTTCAACAGCCTACAGAA 4278 Query 180 CGCTCCCCTACCCAACC-----ACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||| |||||| | | | | | || ||||||||| | ||| ||||| Sbjct 4277 CGCTCTCCTACCACGCATATTTATATATGCATCCGCAGCTTCGGTAACTGGCTTGAGCCC 4218 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | | ||| ||| ||||||||||||||| ||||| || ||| Sbjct 4217 CGTTACATCTTCCGCGCAGGACGACTCGACTAGTGAGCTATTACGCTTTCTTTAAATGAT 4158 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||| |||| | |||||| || |||| || ||||||||| || Sbjct 4157 GGCTGCTTCTAAGCCAACATCCTAGCTGTCTATGCCTTCCCACTTCGTTTCCCACTTAGC 4098 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||||| ||||||||| | |||||| ||||||||||| Sbjct 4097 CA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 4055 >seq3034 Length=3327 Score = 134 bits (148), Expect = 3e-29 Identities = 265/384 (69%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGG 81 ||||||| ||||||| |||| || || | | | | |||| |||||||| ||| Sbjct 2417 CCTTAGGTCCCGACTTACCCTCAGCTGATTAGCATAGCTGAGGAAACCTTGGATTTACGG 2476 Query 82 CGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCCTGCATTCTCACTCGCATCAAC 139 || || ||| |||| ||| || |||| |||||| |||| || | ||| | Sbjct 2477 CGTGAAGGTTTCTCACCT-TCATTATCGTTACTTATGCCTACATTTTCTTTTCTATCCGC 2535 Query 140 TCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCCCCTACCCAACCACA 199 ||||| | ||| || || | ||||| | | | | | ||||||||||| || | Sbjct 2536 TCCACAATACA-TCGCCATACTGCTTCTGCGCAAATAGAATGCTCCCCTACCGAA--ATT 2592 Query 200 CAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCAC 259 | || || |||||||| | ||||| |||| || ||||| || || | | Sbjct 2593 AAATTTCGCAAAGCTTCGGTAGTATACTTATGCCCGAGTA--TTATCCATGCCAAACCGC 2650 Query 260 TTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTG 318 | ||| |||||||| ||||||||||||| || || ||||||||||||||||||| |||| Sbjct 2651 TCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTA 2710 Query 319 GTTGTCTACGCAACTCCACATCCTTTC--CCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 | ||||| ||| | || || ||| | ||| ||| || || ||| ||||||||| Sbjct 2711 GCTGTCTGGGCAGTTTGACCTCGTTTTTTCAACTTAGTATACATTTCGGGACCTTAGCTG 2770 Query 377 ATGATCTGGGCTGTTTCCCTCTCG 400 || |||||| ||||||||||||| Sbjct 2771 TTGCTCTGGGTTGTTTCCCTCTCG 2794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177370685952