Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq9000 230 4e-58 seq6538 187 4e-45 >seq9000 Length=5484 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| | | |||| | |||||||||| ||||| Sbjct 1324 CCCACGCTTTCGTGCATGAGCGTCAGTAATGGCCCAGAGGACTGCCTTCGCCATCGGTGT 1265 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| || ||||||||||||||||| ||||||| || |||||| ||||| | ||| Sbjct 1264 TCCTTCGCATATCTACGCATTTCACTGCTACACGCGAAATTCCATCCCCCTCTGCCACAC 1205 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||| | |||||||| |||||||||| | ||||||||| | || Sbjct 1204 TCGAGCAATGCAGTCACTAATGCAGGTCCCAGGTTGAGCCCGGGGATTTCACATCAGTCT 1145 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 ||| | |||||| | | | |||||| |||| ||| |||| ||||||| || |||||| Sbjct 1144 TGCATCGCCGCCTGCGCACTCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 1085 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 1084 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTATGGTA 1035 Score = 111 bits (122), Expect = 3e-22 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | | ||||||| |||| | | |||||||||| ||| | Sbjct 1543 CCCACGCTTTCGAGCATGAACGTCAGTGTTATCCCAGGAGGCTGCCTTCGCCATCGGTAT 1484 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| |||||||| ||||||| | ||||| ||| Sbjct 1483 TCCTCCACATCTCTACGCATTTCACTGCTACACATGGAATTCTACCTCCCTCTGACACAC 1424 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||||||||||||| | ||||||| | | |||||||||||||| Sbjct 1423 TCTAGTTACCCAGTTTCAAATGCACGTCCCAAGTTGAGCTCGGGGATTTCACATCTGACT 1364 Query 181 T 181 | Sbjct 1363 T 1363 >seq6538 Length=3451 Score = 187 bits (206), Expect = 4e-45 Identities = 215/284 (76%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| | ||||||||| || | | || || | |||||||| | |||||| Sbjct 1924 CCCACGCTTTCGTCCATCAGCGTCAATTGGTATTTAGTAACCTGCCTTCGCAATTGGTGT 1865 Query 61 TCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 || | ||| |||||| ||||||||||||||||| |||||| | | || | | Sbjct 1864 TC-TGTGTAATATCTATGCATTTCACCGCTACACTACACATTCCGGCTACTTCAATACTA 1806 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||||| | |||| || | |||| ||| | |||||| | |||||| |||| Sbjct 1805 TTCAAGACTAGCAGTATCTACGGCAGTTCTACAG-TTGAGCTGTAGGATTTCACCGCTGA 1747 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 1746 CTTACTAATCCGCCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCATCCTC 1687 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1686 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTC 1643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828643651283