Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3034 293 4e-77 seq13862 262 6e-68 >seq3034 Length=3327 Score = 293 bits (324), Expect = 4e-77 Identities = 224/265 (85%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||| |||| ||||| |||||| ||||||||||||||| | |||| || | Sbjct 920 TTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACTTAGCTACTCAGCGGTGAGCC 979 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| |||||| | |||||||||||||| || | |||||||||||||||| | || Sbjct 980 TGGCGACTCAACTGATACACCAGAGGTTTGTTCAACTCGGTCCTCTCGTACTAGAGTCAA 1039 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||| |||||| ||| ||| ||| || ||||| |||||||||||||| |||||||||| Sbjct 1040 CTCCACTCAAACTTCTAACGATCACAACAGATAGAGACCGAACTGTCTCACGACGTTCTG 1099 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 1100 AACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGC 1159 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 1160 CCCAGGATGTGACGAGCCGACATCG 1184 >seq13862 Length=1128 Score = 262 bits (290), Expect = 6e-68 Identities = 214/260 (82%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| | |||| |||||||| ||| || |||| |||| Sbjct 758 GCTTAGATGCTTTCAGCGGTTATCTCGTCCACACTTAGCTACCCGGCGATGCCACTGGCG 699 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| || Sbjct 698 TGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 639 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| |||| |||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 638 GTCAAACTTCCAACGCCCACTGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 579 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||| ||||||||||| |||||||||||| ||| ||||||||| Sbjct 578 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTACAGCCCCAG 519 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 518 GATGTGATGAGCCGACATCG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780652706228