Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9000 333 6e-89 seq6538 150 4e-34 >seq9000 Length=5484 Score = 333 bits (368), Expect = 6e-89 Identities = 323/412 (78%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || | |||||||||| |||| |||||| |||| |||||| Sbjct 981 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATTGCTGGATCAGGGTTGCCCCCATT 922 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 921 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 862 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||| | || ||| ||| ||||| ||| Sbjct 861 GGCTGATCATCCTCTCAGACCAGCTACAGATCGCAGGCTTGGTAAGCCTTTACCTTACCA 802 Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||| |||||| ||||| || ||| || | | |||||| ||||||||| |||| Sbjct 801 ACTACCTAATCTGCCATC--GGCCACTCCAATTGCGCAAGGCCCAAAGGTCCCCTGCTTT 744 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 || || | ||||||||||||| | |||| | | ||| |||||| | || || Sbjct 743 CATCCGTAGATATCATGCGGTATTAGCTAATCTTTCGATTAGTTGTCCCCCACAATTGGG 684 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | |||||||||||| ||||||||| || | || ||| | | Sbjct 683 CATGTTCCGATGTGTTACTCACCCGTTCGCCACTCGCCACC--AGACCGAAG----TCCG 630 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | ||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 629 TGCTGCCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 578 >seq6538 Length=3451 Score = 150 bits (166), Expect = 4e-34 Identities = 149/193 (77%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||| ||||| ||| || || || | ||||||| ||||||| |||||||| | ||||| Sbjct 1535 TTTAAAACCCATAGGGCTGTCATCCTTCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 1476 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1475 TGTCCAATATTCCTCACTGCTGCCTCCCGTA---------NCCGTGTCTCAGTTCCAGTG 1425 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| ||||| | | || ||| ||| ||||| || Sbjct 1424 TGGGGGATCACCCTCTCAGGCCCCCTAAGGATCATTGTCTTGGTAAGCCGTTACCTTACC 1365 Query 184 AACTAGCTAATCC 196 ||||| ||||||| Sbjct 1364 AACTAACTAATCC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222161962048