Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq9000 291 2e-76 seq6538 176 1e-41 >seq9000 Length=5484 Score = 291 bits (322), Expect = 2e-76 Identities = 274/348 (79%), Gaps = 26/348 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||||||||||||||| ||||||||||| | ||||| ||||| | ||||||| Sbjct 791 GATTAGGTAGTTGGTAAGGTAAAGGCTTACCAAGCCTGCGATCTGTAGCTGGTCTGAGAG 850 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 851 GATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 910 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||| ||| |||||||| || |||||| |||||| |||||||| |||||||||||| Sbjct 911 GAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATGCCGCGTGCAGGATGAAGGCCTT 970 Query 347 CGGGTCGTAAA--GCTCT--------------GTCCTCAAG-GAAGA--TA------ATG 381 ||||| ||||| ||| | | || | | |||| || || Sbjct 971 CGGGTTGTAAACTGCTTTTGTATGGGACGAAAATGCTTAGGTTAAGAGCTAGGGCAGCTG 1030 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||||||| | || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1031 ACGGTACCATAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 1090 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | || ||||||| |||||||||| |||||||||| ||||| ||| || Sbjct 1091 GTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGAGTGCGCAGGCGG 1137 >seq6538 Length=3451 Score = 176 bits (194), Expect = 1e-41 Identities = 163/207 (79%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||||| | |||| |||||| ||||||||||||||||||||||||||| | | |||| Sbjct 1338 GATAGGCATGCGTAGGATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACAATGATCCT 1397 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 ||| | ||||||||||||||| ||||| |||||||||||||||| |||| Sbjct 1398 TAGGGGGCCTGAGAGGGTGATCCCCCACACTGGAACTGAGACACGG---------NTACG 1448 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||| ||||||||| |||||||| | |||||||| |||| | ||||||| Sbjct 1449 GGAGGCAGCAGTGAGGAATATTGGACAATGGGTGAGAGCCTGATCCAGCCATCCCGCGTG 1508 Query 332 AGCGATGA-AGGCCTTCGGGTCGTAAA 357 | ||||| || ||| |||| |||| Sbjct 1509 AAGGATGACAGCCCTATGGGTTTTAAA 1535 Score = 111 bits (122), Expect = 5e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||| |||||| | || |||| ||||||||| |||||||||||||||||||||||| | Sbjct 1629 TGAAGGTACTATACGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 1688 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || || ||||||||||||| ||| | ||| |||||||| |||||| || || ||||| Sbjct 1689 GGATGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTCCGTAGGCGGATTAGTAAGT 1747 Query 500 C 500 | Sbjct 1748 C 1748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497308372352