Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq9000 257 4e-66 seq6538 248 2e-63 >seq9000 Length=5484 Score = 257 bits (284), Expect = 4e-66 Identities = 238/300 (79%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 1047 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 1106 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| || ||| | || |||||| | || Sbjct 1107 GAATTACTGGGCGTAAAGAGTGCGCAGGCGGCGATGCAAGACTGATGTGAAATCCCCGGG 1166 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GAGGGGCAAGTGGA 190 ||||||| || |||| || | |||||| ||| ||||| | |||||| | |||| Sbjct 1167 CTCAACCTGGGACCTGCATTAGTGACTGCATTGCTCGAGTGTGGCAGAGGGGGA--TGGA 1224 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||||||| ||||||||||||||||| | ||||||||| |||||||||| | Sbjct 1225 ATTTCGCGTGTAGCAGTGAAATGCGTAGATATGCGAAGGAACACCGATGGCGAAGGCAGT 1284 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||| | | |||||| || | || |||||||||||||||||||||||||||||||| Sbjct 1285 CCTCTGGGCCATTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATAC 1344 Score = 196 bits (216), Expect = 1e-47 Identities = 201/260 (77%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 94 GCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGAC-TGCTTT 152 ||| || |||| |||||||||| |||||| | ||||||| ||||| ||| || Sbjct 1347 GCGCAGACGGTTATTTAAGTCAGATGTGAAATCCCCGAGCTCAACTT-GGGACGTGCATT 1405 Query 153 TGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212 |||||||| |||||||| || || | || ||||||| ||||||| ||||||| Sbjct 1406 TGAAACTGGGTAACTAGAGTGTGTCAGAGGGAGGTAGAATTCCATGTGTAGCAGTGAAAT 1465 Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272 ||||||| || ||||||| ||| |||||||||| || | |||| | |||||| | Sbjct 1466 GCGTAGAGATGTGGAGGAATACCGATGGCGAAGGCAGCCTCCTGGGATAACACTGACGTT 1525 Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332 | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1526 CATGCTCGAAAGCGTGGGTAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 1585 Query 333 GATGAATACTAGGTGTCGGG 352 |||| ||| | ||| ||| Sbjct 1586 GATGTCAACTGGTTGTTGGG 1605 >seq6538 Length=3451 Score = 248 bits (274), Expect = 2e-63 Identities = 247/318 (78%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| Sbjct 1647 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCG 1706 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| |||||| || || |||||||| ||||||| ||| | Sbjct 1707 GATTTATTGGGTTTAAAGGGTCCGTAGGCGGATTAGTAAGTCAGCGGTGAAATCCTACAG 1766 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGT----G 188 |||||| | ||||| | || ||||| | || || | || | | |||| | Sbjct 1767 CTCAACTGTAGAACTGCCGTAGATACTGCTAGTCTTGAAT--AGTATTG--AAGTAGCCG 1822 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||| ||||||||||||||||||| ||||||||| |||||||| | |||||||| Sbjct 1823 GAATGTGTAGTGTAGCGGTGAAATGCATAGATATTACACAGAACACCAATTGCGAAGGCA 1882 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | || || | || |||| |||| | |||||||||||||||| ||||||||||||| Sbjct 1883 GGTTACTAAATACCAATTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGAT 1942 Query 309 ACCCTGGTAGTCCACGCC 326 |||||||||||||||||| Sbjct 1943 ACCCTGGTAGTCCACGCC 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202965700864