Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq9000 502 8e-140 seq3034 387 5e-105 >seq9000 Length=5484 Score = 502 bits (556), Expect = 8e-140 Identities = 419/502 (83%), Gaps = 18/502 (4%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 ||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||| || Sbjct 3716 TCGAGTCCGAATAGGGCGAATTAGTCGCTAGGTGTAGACCCGAAACCGAGTGATCTATCC 3775 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| ||||||||| |||||| | ||||||| ||||||| ||| |||||| ||| Sbjct 3776 ATGGCCAGGTTGAAGGTGCCGTAACAGGTACTGGAGGACCGAACCGACTGATGTTGCAAA 3835 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 || || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 3836 ATCAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTCGGAAATAGCTGGTTC 3895 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | Sbjct 3896 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTTT 3955 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAGTTTT 297 |||||||||||||| |||||||||||||||| ||||||||||||| | ||| || | Sbjct 3956 GGCTAGGGGGTCATGGCGACTTACCAAACCAAGGCAAACTCCGAATACTGCA-GAG---T 4011 Query 298 ACCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || || ||||| || ||| ||||||||| ||||| | | ||||| || || || | Sbjct 4012 ACAGCTTGGGAGACAGTGCACCGGGTGCTAACGTCCGGACACAAGAGGGAAACAACCCAG 4071 Query 355 ACTATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 || ||||||||| ||| ||| || ||||||| | |||||||| || || Sbjct 4072 ACCGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGAAGTGGGAAGGCAT 4126 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||| Sbjct 4127 AGACAGCTAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCAC 4185 Query 473 TAGTCGAGGAGTCGGGCGTGGA 494 |||||||| ||| ||| ||| Sbjct 4186 TAGTCGAGTCGTCCTGCGCGGA 4207 >seq3034 Length=3327 Score = 387 bits (428), Expect = 5e-105 Identities = 431/564 (76%), Gaps = 11/564 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCG--ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| | ||| |||| ||||| ||||||| |||||||| ||| Sbjct 3131 CGAGTCTGAATAGGGCGCTATAGTTAGTGGGATTAGACGCGAAACCTTGTGATCTATCCA 3072 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| | |||||||| |||||| ||||||| | | |||||||| Sbjct 3071 TGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACCGAACCGGTTGACGTTGAAAAG 3012 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| |||||| ||||||||||||||||| |||||| ||| |||||| || || Sbjct 3011 TCTTCGGATGACCTGTGGTTAGGGGTGAAAGGCTAATCAAACTGGGAGATAGCTCGTACT 2952 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCG--GGGGTAGAGC-ACTGTT 236 | |||||| |||||||| || | ||| || | || | |||||||| |||| | Sbjct 2951 CCCCGAAATGCATTTAGGTGCAGCGTTAAGAATGAGTATAATAGAGGTAGAGCTACTGAT 2892 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 ||| | |||| | | | ||||||| | | |||||||||||||| || | | Sbjct 2891 -TGGATGCGGGGGTTTCACCGCCTACCAAATCCTGACAAACTCCGAATGCT-ATTATATG 2834 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | | ||||||||||||||||||||||||| || |||||||| || || || || Sbjct 2833 CTTCTTAGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAACAACCCAGAG 2774 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | ||||||||| ||||||||| ||||||| || ||||| ||| | ||| |||| Sbjct 2773 CAACAGCTAAGGTCCCGAAATGTATACTAAGTTGAAAAAACGAGGTCAAACTGCCCAGAC 2714 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2713 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 2654 Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 |||| || ||| ||||||||| ||||| | ||||| |||||||||| || || | Sbjct 2653 CGAGCGGTTTGGCATGGATAATACTCGGGCA-TAAGTATACTACCGAAGCTTTGCGA-AA 2596 Query 537 TTTATATGATCGGTAGGGGAGCAT 560 |||| || ||||||||||||||| Sbjct 2595 TTTA-AT-TTCGGTAGGGGAGCAT 2574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689270984192