Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3034 331 3e-88 seq9000 311 3e-82 seq13862 156 1e-35 >seq3034 Length=3327 Score = 331 bits (366), Expect = 3e-88 Identities = 364/477 (76%), Gaps = 17/477 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| ||||||||| ||||| ||| |||||||| | | | || || Sbjct 1319 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACC 1378 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | ||||||| ||||||| ||||||||||| ||| ||||| | ||| |||||| Sbjct 1379 AAGCGTGCTGAGGATACCTTTGAAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCCAG 1437 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| ||| ||||| | | || | ||||| |||| Sbjct 1438 TCAAACTACCCACCACGCAATGTCCTTC--------CTTAGG---AAGTTAGGC-TCCAG 1485 Query 181 -TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || || ||||||||||||| | |||||||||| |||||| ||||| ||| || Sbjct 1486 ATAAATAAAGGGTGGTATTTCAACGTCAACTCCACAACTCCTAGCGAAGCCGCTTCACAG 1545 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 | |||||||||||||||||| ||| | | |||||| |||||||||| ||||| | Sbjct 1546 TTTCCCACCTATCCTACACATTATTTACCCGAAGTCAATACGAAGCTATAGTAAAGGTTC 1605 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 | |||||||||||||| ||| | || ||||||| || |||| |||||||||| Sbjct 1606 ACAGGGTCTTTTCGTCCCATTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACC 1665 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | || |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 1666 GAGCTCATGGTTGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTAC 1724 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1725 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 1781 >seq9000 Length=5484 Score = 311 bits (344), Expect = 3e-82 Identities = 414/568 (73%), Gaps = 28/568 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC--ACCACCTGATTG 58 ||||||||| |||||||||||||||| | ||| ||| | |||| | ||| ||| Sbjct 5432 TCGACTTGTCAGTCTCGCAGTCAAGCACGCTTATGCCTATGCACTATTAGCAC--GATGT 5375 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| || || | ||||| | || |||||||||| ||| ||||| | ||||||| Sbjct 5374 CCGACCGTGCCTAGCGTACCTTCGAGCTCCTCCGTTACGCTTTAGGAGGAGA-CCGCCCC 5316 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATA-T 176 ||| ||||| ||||||| ||||||||||| ||| ||| || |||| |||||||| | Sbjct 5315 AGTCAAACTGCCCACCATGCACTGTCCCCCGCCCTGATTCAAGGGCGTAGGTTAGAACCT 5256 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | | || ||| |||||||||||| | | ||||| | |||||| | | | ||| Sbjct 5255 CAAACACAC-CAGGGTGGTATTTCAAGGATGGCTCCATGAGAACTAGCATCCTCACTTCA 5197 Query 237 TAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 || ||||||||||||||||||| | | || || |||| |||||| ||| |||| Sbjct 5196 AAGCCTCCCACCTATCCTACACAGGTCTGTTCAAAATCCCATACAAAGCTACAGTAAAGG 5137 Query 297 TCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | ||||||||| |||| ||||| | | ||||| | || | | ||| ||| Sbjct 5136 TTCATGGGGTCTTTCCGTCTATCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTC 5077 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 | | | || ||| ||||||| || |||||||||||||||||||||||||||||| Sbjct 5076 GCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 5017 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 5016 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGA 4957 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||||| | | ||| ||| ||| ||| |||| |||||||| Sbjct 4956 CTTCAATCAAGAG-CTCTCACCCCA----------TCA--------TTTAATCTTCCAGC 4916 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| ||| || ||||| || Sbjct 4915 ACCGGGCAGGCATCACACCCTATACGTC 4888 >seq13862 Length=1128 Score = 156 bits (172), Expect = 1e-35 Identities = 179/236 (76%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 75 AACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACC 134 |||||| | || |||||||||| ||||||||| | |||||||||| ||||| || ||| Sbjct 233 AACCTTCGTGCTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAGTCAAACTGCCTACC 175 Query 135 AGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGT--CAGAGT 192 | |||| |||||||| |||| | |||| | ||||||| || | | | ||| || Sbjct 174 ATGCACGGTCCCCAATCCAGTTTATGGATCCGGGTTAGAA--CCTCAAAGTCACCAGGGT 117 Query 193 GGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATC 252 |||||||||| || |||||||| |||||||||| | || || || |||||||||||| Sbjct 116 GGTATTTCAAGGGCGGCTCCACAATCACTAGCGTGACTGCTTCTAAGCCTCCCACCTATC 57 Query 253 CTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG-TCCCGGGGTCT 307 |||||||| | | || ||||| | |||||| ||| |||| || |||||||| Sbjct 56 CTACACAAGTGACTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTTCACGGGGTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702068491648