Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq9000 194 4e-47 seq6538 167 5e-39 >seq9000 Length=5484 Score = 194 bits (214), Expect = 4e-47 Identities = 218/288 (76%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--------AGCTC 52 ||||||||||||| ||||||||| ||||||||| || ||||| || ||||| Sbjct 1075 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTATGGTACCGTCAGCTGCCCTAGCTC 1016 Query 53 CCACACGTGGAAGG-TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 | || | ||| |||| |||| || ||||| ||||||||| ||| || ||||||| Sbjct 1015 TTA-ACCT--AAGCATTTTCGTCCCATACAAAAGCAGTTTACAACCCGAAGG-CCTTCAT 960 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| | | ||||| |||| | | |||||| |||| ||||| ||||||||| Sbjct 959 CCTGCACGCGGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGC 900 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| ||| |||||||||||| ||| ||||| || | |||||||||| | Sbjct 899 CTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCA 840 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| |||| ||||| ||| ||| ||||| || |||||||||| Sbjct 839 GCTACAGATCGCAGGCTTGGTAAGCCTTTACCTTACCAACTACCTAAT 792 >seq6538 Length=3451 Score = 167 bits (184), Expect = 5e-39 Identities = 203/277 (73%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||||| || || ||| | ||||||||||||| ||||||| |||| ||| Sbjct 1543 AAAAGAAGTTTAAAACCCATAGGGCTGTCATCCTTCACGCGGGATGGCTGGATCAGGCTC 1484 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1483 TCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTA---------NCCGTGTCTCAG 1433 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 ||||| ||||||||| | |||||||| |||||| ||| | | || ||| |||||| Sbjct 1432 TTCCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAGGATCATTGTCTTGGTAAGCCGTT 1373 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTTAATGATG 320 ||| || |||| ||||| |||||| || ||| | ||| ||||||| | | | Sbjct 1372 ACCTTACCAACTAACTAATCCTACGCATGCCTATCTCTATCTGATAAATCTTTTAATAAG 1313 Query 321 ATACCATGCAATCTCATCATACCATCAGGTATTAATC 357 | |||| | || | ||| ||| |||||||||| Sbjct 1312 AATTGATGCCAATTCCT-ATATTATCCGGTATTAATC 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068591872576