Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1420 125 2e-24 >seq1420 Length=85926 Score = 125 bits (138), Expect = 2e-24 Identities = 350/532 (66%), Gaps = 14/532 (3%) Strand=Plus/Minus Query 37763 TTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTAT 37822 |||| | | || ||||| | | |||||||||||| | ||||| || | ||||| Sbjct 4423 TTACGAAAGGGCTTTCCATTAATCACAACGAAAAAAGTCCATATTAAATCAGTTGTTTAT 4364 Query 37823 GAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTG 37882 ||| | | |||||||| || |||| || || |||| || || || || ||||| Sbjct 4363 GAATTATTGTGGTTTTTGCGTGGAGATAGCAATGTGCGCTGGTTACAAGAAAAAGGCGTC 4304 Query 37883 ACGATTTGGGATGAGTGGGCGG--ACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGC 37940 || ||||||||||| ||||||| ||| || |||||| | ||||| ||||| || | || Sbjct 4303 ACTATTTGGGATGAATGGGCGGATACGCAA--GGCGATTTAGGCCCTATTTATGGTGTGC 4246 Query 37941 AATGGCGCTCGTGG--AAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGT 37998 |||||||| ||| || | |||| || ||||| || || | || | Sbjct 4245 AATGGCGCAGTTGGCCAACG--CCAGATGGTCGGCATATCGATCAAATTACTGAAGTAAT 4188 Query 37999 CGAAGAGATCAAACG---AAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGT 38055 || | || ||| ||| || ||||| | || || | ||||||||||||||||| Sbjct 4187 TAAA---ACCATACGCGAAAACCCTGATTCAAGACGCATGTTAGTGAGCGCTTGGAATGT 4131 Query 38056 AGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGC 38115 || || |||| | ||| | || ||| |||||| |||||||| || || || Sbjct 4130 TTCACAACTGGATCAAATGGCGTTGATGCCATGTCATGCATTATTTCAGTTTTACGTTGC 4071 Query 38116 CAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCC 38175 || || ||| ||| | | ||||| | || | ||||||||| |||| Sbjct 4070 TAATGGAGCGTTAAGCTGCCAGCTTTACCAGCGAAGTGCAGACATGTTTTTAGGTGTGCC 4011 Query 38176 GTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGA 38235 |||||| || || ||||| || | || || || ||||| || || ||| | ||| | Sbjct 4010 GTTTAATATTGCCAGCTATGCATTATTAACACACATGGTTGCACAGCAAACTAATTTGCA 3951 Query 38236 TGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCAT 38287 || ||||| | || | || || |||||| ||| | || |||||||| Sbjct 3950 AGTGGGTGACTTTATCTGGACTGGTGGCGACTGCCACATTTATGAAAATCAT 3899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130609790561450