Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4404 280 1e-70 seq1169 246 2e-60 >seq4404 Length=3800 Score = 280 bits (310), Expect = 1e-70 Identities = 390/546 (71%), Gaps = 3/546 (1%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || ||||| || || || || || || || || |||||||| || |||| Sbjct 2496 TTCAATGCAATTGAGACCATGCCCGCTGTTAAACGCAAGGCTGATTGGGCGCTCTCTTGG 2555 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | | | |||| || ||||| || | | || ||||| | ||||||||| Sbjct 2556 ATTTCATCGAAATCAGCTAATTTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGC 2615 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 |||| || ||||| ||||| | ||||||||| ||||||||||||| |||||||| Sbjct 2616 ATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCT 2675 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 ||| | || ||| |||||| || || || || || || || | || ||||| |||||| Sbjct 2676 GGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGCT 2735 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 ||| | | ||| | | || ||||| | ||||| | | |||||| | ||| || Sbjct 2736 GTTCTTATGTTCCATC---ATTTGGTGCAGCGTCCAACCAAAGAGCGTATTATTGAAATC 2792 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || ||||| || | || || |||||||| |||| || || ||||| || || Sbjct 2793 ATTTCGGAGGCAGTCAAAATAGAGCAGGAATTCTTGACCGATGCATTGCCGGTTAACCTG 2852 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || |||||||||||| ||| |||||| | |||||||| ||||| || || || || | Sbjct 2853 ATTGGCATGAATTGTAAACTGATGTCGGAATATATTGAGTTTGTCGCTGATCGCCTACTA 2912 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || || | || || ||||| || || || || ||||| |||||||| || Sbjct 2913 GTTGAACTCGGCGTGGGCAAAATCTACAACACAAAGAATCCATTCACATTCATGGAATTG 2972 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTG 61938 ||||||||||| ||||||||||| |||||||||||| |||||||| |||||||| || Sbjct 2973 ATTTCGCTGGACGGCAAGACGAACTTTTTCGAGAAAAAAGTAGGCGAATATCAACGCATG 3032 Query 61939 GGTGTA 61944 |||||| Sbjct 3033 GGTGTA 3038 Score = 167 bits (184), Expect = 2e-36 Identities = 205/280 (73%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 61104 AAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGA 61163 |||||| || || || |||||||| || ||||| || ||| |||| || ||| ||| || Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192 Query 61164 CTGGG---AGCGTT----TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216 |||| ||| | || |||||| |||||||| || |||||||| | Sbjct 2193 TTGGGCTAAGCTTACTGATAACGAGCGT-------CATTTCATATCGCACGTGTTGGCTT 2245 Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGG 61276 ||||||| ||||| || || || || ||||| ||||| | || |||||| || || | Sbjct 2246 TCTTTGCTGCTTCCGATGGCATTGTGAATGAAAATTTGGTCGAGCGTTTCAGCCAAGAAG 2305 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | |||||| | ||||| ||||| ||||| |||||||| ||||||||||| ||||| |||| Sbjct 2306 TTCAAGTGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACT 2365 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 | || ||||| || ||| | ||||| || || || || || Sbjct 2366 CCGAAATGTATAGCGTTTTAATCGACACCTATATAAGAGA 2405 >seq1169 Length=8375 Score = 246 bits (272), Expect = 2e-60 Identities = 993/1559 (64%), Gaps = 45/1559 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || || || || || ||||| || |||| ||| || | | ||| ||||| || || Sbjct 825 TCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCAGTT 884 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || || ||| | ||| || || || || | ||||| ||||||| || ||| Sbjct 885 TTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGTTCG 944 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || ||||| ||||| || ||||| || || || ||| || || | |||||||||||| Sbjct 945 GCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCCATT 1004 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | || | | | || ||||||||||| || || || | | | || || | Sbjct 1005 TTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACATCTTTA 1064 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377 ||||| ||||| | || | |||||||||| || | || ||| ||| Sbjct 1065 GGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCATATCA 1124 Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||||||| |||| || | | || | | || | | | || | ||||| ||| Sbjct 1125 TCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTGAAAC 1184 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 || || || | || | | | || || || || ||| ||||||||| |||||| | Sbjct 1185 TCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTCATTA 1244 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557 || || | ||||| || ||||| || || ||||| || || || | | || |||| Sbjct 1245 TTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATTTCTT 1304 Query 65558 AATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA------TCGGTTTA 65611 | ||| | | ||| ||| || | |||| | ||| | ||||| | ||||| Sbjct 1305 ACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGGTTTT 1364 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | ||| |||||| || | ||| ||| |||| | || || || Sbjct 1365 T-------TTCC-----CCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCC 1412 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | || || || | || | || |||| ||| || | || | | Sbjct 1413 TCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTG 1472 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 |||| || || || ||||| || |||| | | || || ||||| || || || Sbjct 1473 TAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGA 1532 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 || ||| | | | || || || | || ||||| ||||| || || |||||||| Sbjct 1533 TAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGT 1592 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 | ||| || || || ||||| | | ||| || |||||||| || || || ||| Sbjct 1593 CTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTT 1652 Query 65912 AAATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAG 65969 | ||| ||||| || || || ||| || || | |||||||||| | | ||| Sbjct 1653 AGATTTCGTGTTAC--TATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTT-- 1708 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 | || || ||||||| | | ||||| ||||| | ||||| | Sbjct 1709 ------------TTCC-GAGGACACAAACATATTTAAGGCAATCGATGCCAAATTGCATA 1755 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 | || || || || || || | ||| || |||||||| ||||| | ||||||||| | Sbjct 1756 CCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAA 1815 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 ||||||| | ||| ||||| || || || | ||| |||| ||| || ||| ||| || | Sbjct 1816 TGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATG 1875 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 ||||||| || || ||||| | ||||| || | |||||||| |||| || | Sbjct 1876 GAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTT 1935 Query 66210 TACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | | ||| || | ||||| |||| || | ||| || | | ||| || |||||| Sbjct 1936 TTC-TACTTGCGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCC 1994 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || || || | || || || || |||||||| || ||||| || | ||| | Sbjct 1995 CAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCC 2054 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 ||||| || |||||| || || || ||||| || ||||| || | ||| || |||| Sbjct 2055 TCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTG 2114 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || || | || |||||| | || | |||||| || ||||| |||||||| Sbjct 2115 TGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAA 2174 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || || | || || || || | || | || || || ||||| || || || || Sbjct 2175 GGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGT 2234 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 |||||||| || || || | | ||| || || || || || ||| | ||||| || || Sbjct 2235 GCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCC- 2293 Query 66569 TCGA---TGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 ||| || | | ||| || || || |||||||| | ||| || |||||||| Sbjct 2294 -CGAAATTGAAGTACCCT-TAGCACGAATGCAATGAACATTTATACCTATTCCACCGGC 2350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397473646304720