Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq3386 223 1e-53 >seq3386 Length=122896 Score = 223 bits (246), Expect = 1e-53 Identities = 325/456 (71%), Gaps = 4/456 (1%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 |||||||| || |||| || |||||||| |||| ||| |||||||| |||||| Sbjct 59958 AAATACCCTATTATCAGCATTGAAGATGGCATGGCTGAAGGTGACTGGGAAGGTTGGGCG 60017 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 || |||||| | || ||| ||||||||||| ||||| || || || || Sbjct 60018 CTGCTAACTGAAAAATTAGGCAAAAAAACGCAATTGGTTGGCGACGATTTATTTGTTACC 60077 Query 2638 AACACTGCTTACCT-TGAAA-AAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCA 2695 ||||| | | | ||||| ||||||||| | || | || ||||| ||| | |||| Sbjct 60078 AACAC--CAAAATTCTGAAAGAAGGTATTGAAAAAAATATCGCAAACTCTATCTTAATCA 60135 Query 2696 AAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAG 2755 | |||| ||||| |||||||||| ||||| |||| |||||| |||||||| ||| | Sbjct 60136 AGATTAATCAAATTGGTACTTTGAGCGAAACATTTGCCGCTATTGAAATGGCCAAATGTG 60195 Query 2756 CTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTG 2815 | || || || || ||| | ||||| || || ||||| |||||| || ||| | | Sbjct 60196 CAGGCTATACTGCCGTAATTAGTCACCGCTCTGGAGAAACCGAAGATAGCACTATCTCCG 60255 Query 2816 ATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACC 2875 ||||||| || | || |||||||| |||||||| || |||||| | ||||| |||||| Sbjct 60256 ATATTGCTGTAGGCACCAACGCTGGACAAATTAAAACTGGTTCACTCTCACGATCTGACC 60315 Query 2876 GTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAAT 2935 | |||||||||| |||||||| | || || ||||| | | ||| | ||||| | | Sbjct 60316 GCGTTGCTAAATATAACCAATTATTACGCATTGAAGAAGATTTAGGTAATATTGCATACT 60375 Query 2936 ACCGTGGTTTGAAATCATTCTACAACTTGAAAAAAT 2971 | | ||| ||| |||| | ||| || || |||| Sbjct 60376 ATCCAGGTCATAAAGCATTTTCCAATTTAAAGAAAT 60411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156002317387812