Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq3386 223 1e-53
>seq3386
Length=122896
Score = 223 bits (246), Expect = 1e-53
Identities = 325/456 (71%), Gaps = 4/456 (1%)
Strand=Plus/Plus
Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577
|||||||| || |||| || |||||||| |||| ||| |||||||| ||||||
Sbjct 59958 AAATACCCTATTATCAGCATTGAAGATGGCATGGCTGAAGGTGACTGGGAAGGTTGGGCG 60017
Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637
|| |||||| | || ||| ||||||||||| ||||| || || || ||
Sbjct 60018 CTGCTAACTGAAAAATTAGGCAAAAAAACGCAATTGGTTGGCGACGATTTATTTGTTACC 60077
Query 2638 AACACTGCTTACCT-TGAAA-AAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCA 2695
||||| | | | ||||| ||||||||| | || | || ||||| ||| | ||||
Sbjct 60078 AACAC--CAAAATTCTGAAAGAAGGTATTGAAAAAAATATCGCAAACTCTATCTTAATCA 60135
Query 2696 AAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAG 2755
| |||| ||||| |||||||||| ||||| |||| |||||| |||||||| ||| |
Sbjct 60136 AGATTAATCAAATTGGTACTTTGAGCGAAACATTTGCCGCTATTGAAATGGCCAAATGTG 60195
Query 2756 CTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTG 2815
| || || || || ||| | ||||| || || ||||| |||||| || ||| | |
Sbjct 60196 CAGGCTATACTGCCGTAATTAGTCACCGCTCTGGAGAAACCGAAGATAGCACTATCTCCG 60255
Query 2816 ATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACC 2875
||||||| || | || |||||||| |||||||| || |||||| | ||||| ||||||
Sbjct 60256 ATATTGCTGTAGGCACCAACGCTGGACAAATTAAAACTGGTTCACTCTCACGATCTGACC 60315
Query 2876 GTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAAT 2935
| |||||||||| |||||||| | || || ||||| | | ||| | ||||| | |
Sbjct 60316 GCGTTGCTAAATATAACCAATTATTACGCATTGAAGAAGATTTAGGTAATATTGCATACT 60375
Query 2936 ACCGTGGTTTGAAATCATTCTACAACTTGAAAAAAT 2971
| | ||| ||| |||| | ||| || || ||||
Sbjct 60376 ATCCAGGTCATAAAGCATTTTCCAATTTAAAGAAAT 60411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156002317387812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |