Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq6120 86.0 1e-11
>seq6120
Length=7451
Score = 86.0 bits (94), Expect = 1e-11
Identities = 196/294 (67%), Gaps = 12/294 (4%)
Strand=Plus/Plus
Query 196777 GTTGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836
||||||||| ||||||||||| || || || |||||| || ||||| || || |||||
Sbjct 4855 GTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCTTTAACAT 4914
Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCA----ACAGG--TTAACATGGTACC 196890
||| || || ||| |||| | ||||| | || || || || |||| |||
Sbjct 4915 CGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAA------ACC 4968
Query 196891 GGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGT 196950
||| || |||||| || || || | || ||||| || ||||| |||| |
Sbjct 4969 GGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAACCATT 5028
Query 196951 AGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACC 197010
| |||||| || | ||| | || | | || |||| || || || || || |||
Sbjct 5029 GAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGCGTAAAGT 5088
Query 197011 GGACAGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCC 197064
||||| ||| |||| ||||| || ||||| ||| | | || ||| ||||
Sbjct 5089 GGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTATTGGTTACAATCC 5142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771354596935560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |