Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq6538 100 4e-16 seq9000 87.8 2e-12 >seq6538 Length=3451 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||||| Sbjct 3179 GGGGAATTAGCTCAGTTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 3238 Query 142852 TCCGTTATTCTCCAC 142866 ||| ||||||||||| Sbjct 3239 TCCCTTATTCTCCAC 3253 >seq9000 Length=5484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 2618 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 2677 Query 142853 CCGTTATTCTCCACCAAC 142870 |||| || |||||||||| Sbjct 2678 CCGTCATCCTCCACCAAC 2695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691290890187480