Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq183 136 3e-27 >seq183 Length=738700 Score = 136 bits (150), Expect = 3e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || |||||||| ||||| ||||| |||||||| || || || || || |||||||| ||| Sbjct 170895 CACTTCATTAAGCATGTATTGGCTTTCTTTGCTGCATCAGATGGCATAGTCAATGAAAAT 170954 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | | ||| | ||| | || ||||| ||||| | || || | |||||||| ||||| Sbjct 170955 CTGGTTGAAAGGTTCTCCCAAGAGGTACAAGTAACAGAAGCCAGATGTTTCTATGGCTTT 171014 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 |||||||| ||||| ||||| || || || ||||| | ||||| ||||| |||||| Sbjct 171015 CAGATTGCAATGGAAAATGTACATTCAGAAATGTATTCCCTACTCATTGATACATACATC 171074 Query 61372 AGGGA 61376 ||||| Sbjct 171075 AGGGA 171079 Score = 118 bits (130), Expect = 8e-22 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || |||||||| | ||||| | || || ||| ||| || |||||||| || | Sbjct 171289 TTATTCAATGCTGTAGAGACTCTTCCATGTGTAAAGAAGAAGGCAGATTGGGCTCTCCAG 171348 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | || | | | ||||||||||||||| || | | |||||||| | || ||| Sbjct 171349 TGGATAGCAAGCAAATCTGCTACATTTGGTGAAAGAATTGTAGCATTTGCCGCTGTTGAG 171408 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || ||| |||| ||||| |||| |||||| |||| || | ||||| ||| Sbjct 171409 GGAATTTTCTTCTCTGGAAGTTTTGCTTCAATATTTTGGCTGAAAAAGAGAGGACTAATG 171468 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || || || |||||||||||||| |||| ||| | || |||| Sbjct 171469 CCTGGCCTAACCTTCAGCAATGAAATGATTTCAAGGGATGAGG 171511 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| ||||| | || |||||||| ||||| || |||| || || | || |||| Sbjct 170561 GAACCACTATTACGCGAAAATCCTCGCCGTTTTGTTATGTTTCCTATTCAATACCCGGAT 170620 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| |||||||| |||||||| |||||||| || || || || || || Sbjct 170621 ATTTGGCAAATGTATAAAAAGGCAGAAGCTTCTTTCTGGACTGTTGAAGAAGTGGACTTA 170680 Query 61147 TCCAA 61151 || || Sbjct 170681 TCGAA 170685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397532396294720